Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01573 ATGTCTGATTCATTCACTGCCTTCAAGCTTCGTTCTCCCACTTCAAACTCCACCATTTCTGCTTCAGCTCCCAAAATCTCTTCAATTTCCTCCATTATCCCACCTTTCTGTATTTGCCCCTACTGCATCAATCATCATCTGGCATATGTAGCAGAACAAAGACCAAGTGCAGGGTTTCACGTTCAATCCCAGCAAAGTTCAAGGTGGAGTCCAACCCCAGCACAGCTTTTAATCCTTGAAGAACTGTTTAGAAGAGGGACGAAGACACCAACGGCAGAACAAATCCAGCAAATAACTTTGCAGCTCAGAAGATTTGGCAAGATTGAAGGCAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCAAGAGAACGTCAGAAACGTCGTCGTAGGGAGATGGAGAAAACTACTTGTGAAGATGCAAAAGCGTACAATATGGGAAGCTCAGAAAAGCAACAAGAAGCTGAGGCTGCAGTTAATTTGGGTTTTGTCTGTACTTTGGCTACAGGGTTGAGGGAGACAGGTTATGAAGTTGAAGAGACAAAGAAGTGGGCATCTTCTTCAAACTGCAGTGGACTTGCAGATGAGTCTGCTTCACTGGATATAGCAGAGAGGAAATCAGATAAGTGGACTCAGTTTAAGGAGAGAGAAACGCTTGTTTTGAGAAGAAAGGAAGCTAAGTGCCAAAACATGCAGATGCCACGCTCACTTCCCTATCACCTCGAAGACATATCTCCTACAGCTTCTACAGCTTCAGAAGCTGCAGCTGCACACAGAAGTCCTAGCTCTCAACTTTTGACCCCTCTGTGTTATAGTTTGCCATTTTTACTCAACAGAGAAAGTTTGACTTGTTACGGGGAAGAAAATGCAGAAACTCATGATCAGACCCTTGAGCTTTTTCCACTTAAGAGGGATCGTGACCAAGATGGCAATTCTCCCATTAAAAGCAAAGCTAGATTCTGCTGTGCTTCTGCTTCTGTGAACACTGAAATAAGCTCCAATCAGTTTTTTGAGTTTCTTCCTTTGAAACATTA 1034 0.4323 MSDSFTAFKLRSPTSNSTISASAPKISSISSIIPPFCICPYCINHHLAYVAEQRPSAGFHVQSQQSSRWSPTPAQLLILEELFRRGTKTPTAEQIQQITLQLRRFGKIEGKNVFYWFQNHKARERQKRRRREMEKTTCEDAKAYNMGSSEKQQEAEAAVNLGFVCTLATGLRETGYEVEETKKWASSSNCSGLADESASLDIAERKSDKWTQFKERETLVLRRKEAKCQNMQMPRSLPYHLEDISPTASTASEAAAAHRSPSSQLLTPLCYSLPFLLNRESLTCYGEENAETHDQTLELFPLKRDRDQDGNSPIKSKARFCCASASVNTEISSNQFFEFLPLKH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01573 344 Pfam Homeodomain 66 126 IPR001356 GO:0003677
Bva01g01573 344 Gene3D - 66 134 - -
Bva01g01573 344 ProSiteProfiles 'Homeobox' domain profile. 62 127 IPR001356 GO:0003677
Bva01g01573 344 SMART HOX_1 64 131 IPR001356 GO:0003677
Bva01g01573 344 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 50 343 IPR044555 GO:0003700|GO:0099402
Bva01g01573 344 CDD homeodomain 68 122 IPR001356 GO:0003677
Bva01g01573 344 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 50 343 - -
Bva01g01573 344 SUPERFAMILY Homeodomain-like 61 129 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01573 Bva-Chr1 17132815 17135429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01573 66 344 Wox Gene Family AT3G18010 36.129 7.39e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Bva01g01573 Homeodomain 2.4e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01573 01 17132815 17135429 Bva01g01573 01 17132815 17135429 ECH