Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01543 ATGCCCAAATCCAAAAGTTTTTTTCACAACATCATGAGGCCTTTCAAATTCGGTTCCAGAAGAGAAGGAAATGGCGAAAACGATTTAGATAGAATAGCTGCTCAGGAGCAGAAGGTGTTTGCCTATGAAACCTTAGCTTCTGCTACTAAAAATTTTCACCCTCATCATAAGCTAGGTCAGGGAGGATTTGGACCCGTCTACAAGGGAAAATTGGATGATGGGAGAGAAATTGCAGTGAAGAAGTTATCACAGAGCTCAAAccaagggaaaaaagaattcaTGAATGAGGCCAAGTTATTAGCTAGAGTTCAGCACAGGAATGTGGTGAACTTGCTTGGTTATTGTGCTCATGGCAATGAGAAGCTACTTGTTTATGAGTATGTCGCCAATGAGAGCCTTGACAAGCTTCTATTCAAGTCAGATAGGAAAGAACAGCTCGATTGGAAAAGAAGGTTTGACATAATAACTGGAATTGCTCGAGGCTTACTTTATCTTCATGAAGACTCACACAACTGTATCATTCATCGCGATATCAAAGCTAGTAATATCTTACTTGATGACAAATGGATCCCTAAGATTGCTGACTTTGGCATGGCTCGTCTCTTTCCTGAAGATCAAACACACGTCAACACACGAGTGGCTGGGACCAATGGATACATGGCTCCTGAGTATGTTATGCACGGACATTTATCCATAAAAGCGGATGTGTTCAGCTTCGGAGTTCTGGTATTGGAGCTGATTAGTGGCCAGAGAAACTCATCCTTTAGTCAAGGGGATGCACAGAATCTGCTTGATTGGGCATACAAGCTTTACAAGAAAGGAAGGAGCCTAGAAATAGTGGATCCAGCATTAGCATCTTCTGCAGTTGCAGATCAAGTGGCAATGTGCATACAATTAGGCCTACTCTGCACCCAAGGTGATCCCCAGCTTCGCCCTAACATGCGGCGCGTGGTGGTGATGCTGTCGAGGAAGCCGGGCCACATGGATGAACCAACCCGGCCAGGAGTGCCCGGCTCCAGATACAGAAGACATCGTAGACCTTCAGCAATGTCTTCCACGGCTGGTACTTCCGGTGAATCCGATTCAAATTCTCACACATTCGACTCGAGCAATAACTATACCACCACCACCGCCACAGGAACAAGCTCTGCTATTGCTAATGCTAATGCAGAACCCGACCCGAAAGGGAAACGCCCAGTTCATGAGATTTG 1211 0.4467 MPKSKSFFHNIMRPFKFGSRREGNGENDLDRIAAQEQKVFAYETLASATKNFHPHHKLGQGGFGPVYKGKLDDGREIAVKKLSQSSNQGKKEFMNEAKLLARVQHRNVVNLLGYCAHGNEKLLVYEYVANESLDKLLFKSDRKEQLDWKRRFDIITGIARGLLYLHEDSHNCIIHRDIKASNILLDDKWIPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSIKADVFSFGVLVLELISGQRNSSFSQGDAQNLLDWAYKLYKKGRSLEIVDPALASSAVADQVAMCIQLGLLCTQGDPQLRPNMRRVVVMLSRKPGHMDEPTRPGVPGSRYRRHRRPSAMSSTAGTSGESDSNSHTFDSSNNYTTTTATGTSSAIANANAEPDPKGKRPVHEI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01543 403 Pfam Protein tyrosine and serine/threonine kinase 55 319 IPR001245 GO:0004672|GO:0006468
Bva01g01543 403 SUPERFAMILY Protein kinase-like (PK-like) 37 337 IPR011009 -
Bva01g01543 403 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 376 - -
Bva01g01543 403 MobiDBLite consensus disorder prediction 349 388 - -
Bva01g01543 403 ProSiteProfiles Protein kinase domain profile. 52 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g01543 403 MobiDBLite consensus disorder prediction 323 403 - -
Bva01g01543 403 Gene3D Phosphorylase Kinase; domain 1 18 127 - -
Bva01g01543 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Bva01g01543 403 Gene3D Transferase(Phosphotransferase) domain 1 128 330 - -
Bva01g01543 403 CDD STKc_IRAK 58 323 - -
Bva01g01543 403 SMART serkin_6 52 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g01543 403 PANTHER RECEPTOR-LIKE KINASE 3 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01543 Bva-Chr1 16889244 16893233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01543 30 335 Receptor kinase-like Gene Family AT4G11530 51.780 8.01e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Bva01g01543 PK_Tyr_Ser-Thr 1.2e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01543 01 16889244 16893233 Bva01g01543 01 16889244 16893233 ECH