Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01541 ATGAAATTAAGCCAAGTGCTATTAAAATCCTCGTCGCACAAAGGTCATCCCATTTTTCCTTCTCGCTCTGTTCGCTCTCTCTCTCGCACATTCTTGCTTCAACCGAACGCCCCAAAGGATCAGATGGTGCTCTTCAAGGTTTCACTTAAAGATACGACACCGTTTGGTGACCAGAAGCCTGGAACCTCTGGTCTTCGCAAGAAGGTTAAAGTATTCGTACAGCCTAATTACCTTCACAATTTCGTTCAGGCAACATTCAATGCACTAACGGCAGAAAAAGTTAAAGGTGCTACGTTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGATGCTATTCAGATTATTGTTAAAATGTCTGCTGCAAATGGAGTAAGACGTGTTTGGGTTGGTCAAAATGGATTGCTTTCAACTCCTGCTGTATCTGCTGTTATACGTGAAAGAGTTGGGGTTGATGGATCCAAGGCAACAGGTGCGTTTATACTGACAGCAAGCCACAACCCTGGTGGTCCACATGAGGATTTTGGGATTAAATATAACATGGAAAATGGTGGGCCAGCTCCAGAGGGAATCACTAATAGGATCTATGAGAACACAAAAACAATTAAGGAGTACTTGATTGCTGAAGATCTTCCTAATGTGGATATCAGTTCCATAGGTGTTACAAGCTTTACAGGCCCTGAAGGACAGTTTGATGTTGAGGTTTTTGATTCAGCAAATGATTATGTAAAATTGATGAAGtcaatttttgattttgattctatCAAGAAACTATTATCATCTCCCAAATTCACATTCTGTTATGATGCACTGCATGGAGTTGCTGGAGCTTATGCCAAGCGTATTTTTGTTGAAGAGCTTGGAGCACAAGAGAGCTCTCTACTTAACTGTGTGCCAAAGGAAGACTTTGGAGGAGGGCATCCAGATCCCAATCTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGACTGGGTAAAACAGACTCATCAGGTGAGCCACCAGAGTTTGGTGCTGCCGCTGATGGTGATGCTGATCGTAACATGATTCTTGGTAAAAGgttttttgTTACTCCATCAGATTCCGTGGCTATTATTGCTGCAAATGCTGTTGAAGCTATACCATACTTTTCTGCTGGCTTAAAGGGTGTTGCCAGGAGCATGCCAACCTCTGCTGCCCTCGATGTTGTAGCCAAACAtcttaatttgaaattctttGAGGTGCCAACAGGCTGGAAGTTCTTTGGTAATTTAATGGATGCTGGATTATGTTCAGTTTGTGGTGAAGAAAGTTTTGGAACTGGCTCTGACCATATTCGAGAGAAAGATGGAATCTGGGCTGTTTTGGCCTGGCTTTCCATACTtgcacataaaaataaagataaacttGGTGGGGACAAGCTTGTGACAGTCGAAGACATTGTTACCCAACATTGGGCTACCTATGGGCGCCATTATTATACCCGATACGACTATGAAAATGTGGATGCAGGTGCAGCAAAGGAACTCATGGCATATTTGGTCAAATTGCAGTCCTCCCTTTCTGAAGTCAATCAGATTGTCAAGGGAGTAAGGTCAGATGTGTCAAATGTTGTCCACGCTGATGAATTTGAATACAAAGATCCTGTGGATGGTTCCGTTTCAAGCCATCAAGGCATCCGGTATTTATTTGAGGACGGCTCACGATTGATTTTCCGCCTTTCGGGAACTGGGTCTGAAGGTGCAACTATTCGTCTATACATTGAGCAATATGAAAAGGATCCATCAAAAACTGGGAGATCTTCTCAAGATGCCCTTGCTCCTCTTGTTGAGGTTGCTCTGAAGCTCTCAAAGATGGAAGAATTCACCGGTCGATCTGCTCCAACAGTCATCACCTA 1874 0.4205 MKLSQVLLKSSSHKGHPIFPSRSVRSLSRTFLLQPNAPKDQMVLFKVSLKDTTPFGDQKPGTSGLRKKVKVFVQPNYLHNFVQATFNALTAEKVKGATLVVSGDGRYFSKDAIQIIVKMSAANGVRRVWVGQNGLLSTPAVSAVIRERVGVDGSKATGAFILTASHNPGGPHEDFGIKYNMENGGPAPEGITNRIYENTKTIKEYLIAEDLPNVDISSIGVTSFTGPEGQFDVEVFDSANDYVKLMKSIFDFDSIKKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKTDSSGEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKDKLGGDKLVTVEDIVTQHWATYGRHYYTRYDYENVDAGAAKELMAYLVKLQSSLSEVNQIVKGVRSDVSNVVHADEFEYKDPVDGSVSSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKTGRSSQDALAPLVEVALKLSKMEEFTGRSAPTVIT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01541 624 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 58 205 IPR005844 GO:0005975|GO:0016868
Bva01g01541 624 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 159 168 IPR016066 GO:0000287
Bva01g01541 624 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 241 350 IPR005845 GO:0005975
Bva01g01541 624 SUPERFAMILY Phosphoglucomutase, first 3 domains 240 355 IPR016055 GO:0005975|GO:0016868
Bva01g01541 624 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 44 156 IPR045244 GO:0004614|GO:0005975
Bva01g01541 624 SUPERFAMILY Phosphoglucomutase, C-terminal domain 483 624 IPR036900 GO:0016868|GO:0071704
Bva01g01541 624 SUPERFAMILY Phosphoglucomutase, first 3 domains 342 488 IPR016055 GO:0005975|GO:0016868
Bva01g01541 624 PANTHER BNAA09G30060D PROTEIN 44 156 - -
Bva01g01541 624 PANTHER BNAA09G30060D PROTEIN 156 624 - -
Bva01g01541 624 Gene3D - 47 245 - -
Bva01g01541 624 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 541 585 IPR005843 GO:0016868|GO:0071704
Bva01g01541 624 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 156 624 IPR045244 GO:0004614|GO:0005975
Bva01g01541 624 CDD PGM1 52 624 - -
Bva01g01541 624 SUPERFAMILY Phosphoglucomutase, first 3 domains 46 270 IPR016055 GO:0005975|GO:0016868
Bva01g01541 624 Gene3D - 464 624 - -
Bva01g01541 624 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 358 481 IPR005846 GO:0005975|GO:0016868
Bva01g01541 624 PRINTS Phosphoglucomutase/phosphomannomutase family signature 299 312 IPR005841 GO:0005975|GO:0016868
Bva01g01541 624 PRINTS Phosphoglucomutase/phosphomannomutase family signature 263 282 IPR005841 GO:0005975|GO:0016868
Bva01g01541 624 PRINTS Phosphoglucomutase/phosphomannomutase family signature 334 349 IPR005841 GO:0005975|GO:0016868
Bva01g01541 624 PRINTS Phosphoglucomutase/phosphomannomutase family signature 158 172 IPR005841 GO:0005975|GO:0016868
Bva01g01541 624 Gene3D - 355 453 - -
Bva01g01541 624 Gene3D - 246 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01541 Bva-Chr1 16862578 16870584 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01541 01 16862578 16870584 Bva01g01541 01 16862578 16870584 ECH