Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01540 ATGGACAAACAAGTGTTGACCTATTCCTGTTGCATTGCCTATCTTCTAATTTATTCTCTCATGTTTGTGCATGGAGATAAAATTCCAAAGTCATGCAGCCAAACCCCATATCCCCATGTGTGCAGCCATTACATGGGAACTGCAAATACATTATCAACCCTAGATGCTTCTTCCTTCCATGAAATGGCCCTTAGGGTCACCATGGACCAAGCCATTGAAGCTCACAAGCTTGTCTCAACCATGAAATTGgataatttcaataataagtTCTCAAAATTGGCGTGGGACGATTGCTTGGAGCTCTATGAGGACACAGTGAACAAACTAAACCGTTCAATGAGTTCAAACAATCCAAATGATAGGTTAACTTGGCTAAGTGCTTCCATTGCGAACCAACAAACTTGCCAAAATGGTTTCCTTGACTTCAACCTCTCTTCTCACTTAAACTACTTCCCAGACATGTTGAGCAACTTCTCCAAACTGATTAGCAATTCATTAGCCATAAACCATGCTTTGTCTTTGGCTTTGGCTTCATCATCTTCCCTGGTGAATGGCAAGCAAACTGGTGGGAGAAGGTTGCTCTCCCATGGCTTCCCCGAATGGCTATCGGCTTCGGATAGAAGGCTTCTTCAGGCAACAGGGACAGGTCCCAAAGCTGATATAGTAGTAGCACAAGATGGAAGTGGGAATTACAAGACCATTTCAGAGGGTGTGGCTGCAGCTTCAAAGAGAGGAGGTGGAAGAGTTGTTGTGTACGTGAAAGCTGGTGTTTACAAGGAACAAGTTGAGGTTACAAAgtcaatgaaaaatttgatgatttttggaGATGGAATTGATGCAACCATTGTAACGGGAAGCAAGAGTGCACAATCAACCACCACTTTTCGTTCTGCTACTTTTGGGATTGCTGGCGACGGCTTCATGGCCAGAGACATCACCTTTGAGAACACCGCCGGACCTCAGAACCACCAAGCGGTGGCTCTCCGGTCCGGCTCCGACCACTCGGTGTTCTACCGGTGCAGCTTTAAAGGCAACCAGGACACCCTATATGTCTACTCCCAACGCCAATTCTACCGTGACTGCGTTATCTACGGCACCGTGGACTTCATCTTCGGCGACGCCGCGGTGGTGTTGCAGAGCTGCAACATCATCATGAGAAAAAGCGACAAGCGGAACACGGTGACGGCTCAAGGGAGAACAGACCCTAATGAGAACACGGGCATTATCATCCATAACTCACGCATATCAGGCTCCGGCAGTAATAACTTTCTTGGTCGACCATGGCAGAAGTATTCAAGGACAGTGGTGATGAAAAGCTCCATAGATGGATCAATTAACCCTGCTGGGTGGGCCCCATGGAGTGGGGGctttgctttgagcactctctATTATGGTGAGTATATGAATTCCGGGCCCGGAGCTGACACCTCCGGGAGGGTCAATTGGCCAGGGTTTCATGTCATTACTAGTCCAGCTGAGGCCGGGAAATTCACCGTAGGCAATTTCTTGGCCGGAGGCTCGTGGATTACCGGCACCGGCGTGCCGTTTGACTCCGGCTTGTG 1562 0.4667 MDKQVLTYSCCIAYLLIYSLMFVHGDKIPKSCSQTPYPHVCSHYMGTANTLSTLDASSFHEMALRVTMDQAIEAHKLVSTMKLDNFNNKFSKLAWDDCLELYEDTVNKLNRSMSSNNPNDRLTWLSASIANQQTCQNGFLDFNLSSHLNYFPDMLSNFSKLISNSLAINHALSLALASSSSLVNGKQTGGRRLLSHGFPEWLSASDRRLLQATGTGPKADIVVAQDGSGNYKTISEGVAAASKRGGGRVVVYVKAGVYKEQVEVTKSMKNLMIFGDGIDATIVTGSKSAQSTTTFRSATFGIAGDGFMARDITFENTAGPQNHQAVALRSGSDHSVFYRCSFKGNQDTLYVYSQRQFYRDCVIYGTVDFIFGDAAVVLQSCNIIMRKSDKRNTVTAQGRTDPNENTGIIIHNSRISGSGSNNFLGRPWQKYSRTVVMKSSIDGSINPAGWAPWSGGFALSTLYYGEYMNSGPGADTSGRVNWPGFHVITSPAEAGKFTVGNFLAGGSWITGTGVPFDSGL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01540 520 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Bva01g01540 520 ProSitePatterns Pectinesterase signature 1. 245 264 IPR018040 -
Bva01g01540 520 SMART PMEI_2 23 168 IPR006501 GO:0004857
Bva01g01540 520 Pfam Pectinesterase 220 505 IPR000070 GO:0030599|GO:0042545
Bva01g01540 520 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 23 519 - -
Bva01g01540 520 PANTHER PECTINESTERASE 23 519 - -
Bva01g01540 520 CDD PMEI-like_3 31 170 - -
Bva01g01540 520 SUPERFAMILY Pectin lyase-like 215 519 IPR011050 -
Bva01g01540 520 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857
Bva01g01540 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 173 IPR035513 -
Bva01g01540 520 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 172 IPR006501 GO:0004857
Bva01g01540 520 Gene3D - 218 520 IPR012334 -
Bva01g01540 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01540 Bva-Chr1 16855272 16857740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01540 10 520 Carbohydrate Esterase AT1G23200 53.604 0.0 538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01540 01 16855272 16857740 Bva01g01540 01 16855272 16857740 ECH