Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01343 ATGTTGAATGTTGATGTGCTTGGCaacaagaagaggaagagatgTGTGAGGGTTTTCAAGTTCAAGAATTTTGGTGATCCTGGTTACCCAGTTGAGTTTAATGGTCCATTTCGTGAGAATGTGAATGCACTGCTTGAATTTGCAAATTTGGAGGCTAATTTAGGTTTGGGAATGACCATTTGGTCATTTCAACTGGAAGTTCATCGCCACCCACCTTTCCATGTTTTGTTCTTTGTGATTGAAGAACCAATCGAGTCCTCACTCACCCCTCACTGCAAGAATTGTCAATATATAGGCTGGGGGAGACATCTCATATGCAATAAGAAGTATCACTTTCTGATGCCTTCAAAGGAGACATTAGCTGCTTGTCTGAGCTGTGAAGGCCTGCAGTGTGATGCAGCTTCTCCTGGAATGAACAATGGTAAGTCCAAATTAATAGAACTACAAGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTGTGTATCAATGGCTTGGAAACGGGTTCTGATTTGGCTGGACACCAGATCATGGAGTTTTGGGACCGATTGTGCACTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACCTTTCACAAAAAAGAGGCATGGAGCTGAGACTTCTCAATGGAATAGCATATAACGAGCCATGGTTTGGTAGATGGGGTTACAAATTTGGGCGAGGATGCTTTAGTGTCACTCAACCCACATACCAAAGGGCTATAGAGGCAATAAGAAGCATGCCACTATACTTGATAATACACCATATTGGCACTTCCAACCTTAACATTCCCATAATATTCTCAAGGTACCAAACACTTTCAGACCCATCCCTAGTGACTCTTGGCGAcctatttcatttcatgttagAGCTCAAATCACGCCTTCCACGCGAAAGCTCTTTTGGTTTTTGTAACGCCAATGTCTTAGCTGAAACGAATTGTCGTTGGTCACCTAAAAGGATCGAAATGGCAACTAGGGTTATAGTTGAGGCCTTAAGAAGAGCTGAATACAAGTGGATTTCAAGGCAAGAAGTTAGGGATGCTGCTCGAGCTTACATTGGTGACACGGGATTGCTCGATTTTGTGTTAAAATCATTGGGAAACCATGTTGTGGGAAACTATTTGGTTCGCCGAAGCTTGAATCCAGTGACAAAAGTCTTGGAATATTGCTTAGAAGACATTTCTACTGCATTTCCTAGTCATGAAGGTTTGATCATGGGCAATAAAGCCAAGGATAGGTTCAAGATCACAAGGGCTCAACTTATAAAGGACatgatttatttgtataaatacaTTCTCATAGACCCAAAACCAGCACCAAGATCAGAGATTCTCTCAGCTATACCTTTAGCAGCAAGGATAATTCTTGACACCAAGTATCTTATCAAAGATTACTTTTGTGAGCTTCCTTTCCAATTTGAATTAGACATGGAAGGGAAACTCAGCCTTTATTGTACAATCATGTTGAGGAACAACACAGGCCATGAGGGTTATCTAGATAGGGAAATGCCCCCATATGAGTGCATCACATTGAAAAGCAGTGCTACCATCACTGACCTAAAGCTTGAAGTTGAAAGGAATTTCAAAGAGATTTATTGGGGATTGAAGGGTTTTGTCGTGGAATCAATTGTGAATTTGAATGCCAATGGAACAGATTTGGTTTTCGGGCAAATCGAAGTGGGTCGAGAACTTGTCGTTGAGGGTTGGAGCAGTAACATGGGAATGAACATGTATGAAAGTGATCCTAGTAATGGGGTGGTGGATTGCACTTGTGGAACTAAAGAAGATGACGGGGAAAGGATGGTTTCATGTGATATATGTGAAATTTTGCAGCATACTCGGTGTGTTCGAATTCcaaatgatgaagaaattcctcatatatttttgtgcAGAAGGTGTGAGCAAGAAATTGTTCAGTTCCCTGCATTGCCATA 1952 0.3996 MLNVDVLGNKKRKRCVRVFKFKNFGDPGYPVEFNGPFRENVNALLEFANLEANLGLGMTIWSFQLEVHRHPPFHVLFFVIEEPIESSLTPHCKNCQYIGWGRHLICNKKYHFLMPSKETLAACLSCEGLQCDAASPGMNNGKSKLIELQGHMMHGVFHSNGFGHLLCINGLETGSDLAGHQIMEFWDRLCTGLQARKVSLNDLSQKRGMELRLLNGIAYNEPWFGRWGYKFGRGCFSVTQPTYQRAIEAIRSMPLYLIIHHIGTSNLNIPIIFSRYQTLSDPSLVTLGDLFHFMLELKSRLPRESSFGFCNANVLAETNCRWSPKRIEMATRVIVEALRRAEYKWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISTAFPSHEGLIMGNKAKDRFKITRAQLIKDMIYLYKYILIDPKPAPRSEILSAIPLAARIILDTKYLIKDYFCELPFQFELDMEGKLSLYCTIMLRNNTGHEGYLDREMPPYECITLKSSATITDLKLEVERNFKEIYWGLKGFVVESIVNLNANGTDLVFGQIEVGRELVVEGWSSNMGMNMYESDPSNGVVDCTCGTKEDDGERMVSCDICEILQHTRCVRIPNDEEIPHIFLCRRCEQEIVQFPALP 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01343 650 Pfam PHD-finger 595 641 IPR019787 -
Bva01g01343 650 ProSitePatterns Zinc finger PHD-type signature. 595 639 IPR019786 -
Bva01g01343 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 579 644 IPR013083 -
Bva01g01343 650 SMART PHD_3 594 640 IPR001965 -
Bva01g01343 650 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 650 - -
Bva01g01343 650 CDD PHD_MMD1_like 594 639 - -
Bva01g01343 650 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 650 - -
Bva01g01343 650 SUPERFAMILY FYVE/PHD zinc finger 586 642 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01343 Bva-Chr1 14616855 14619682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01343 10 650 PHD Transcription Factor Family AT5G22260 52.616 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva01g01343 PHD 4.7e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01343 01 14616855 14619682 Bva01g01343 01 14616855 14619682 ECH