Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01342 ATGATAGATAATAGTGCTTCTTCCGGTGCACCTTCTTCTGATGCCTTTGCTTCATCAGAAAATGGAGTCTGCAACAAAAGAAGACGAAGGCCAGCAGGGACACCAGATCCAGATGCTGAGGTTGTGTCTCTATCGCCAAAGACCCTTCTGGAATCTGATCGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAAAGGGACCAGAATCTTCAGATGCATAGGAGAAGGCATAAGGTGCCATGGAAATTGCTCAAAAGGGAAACACAAGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAACCAACCTGTTTGCACCATGACCCTTGCCATGCTCTTGGTGATCTTGTTGGAATCAAGAAGCACTTCAGAAGAAAGCACAGCAATCACAAGCAGTGGGTTTGTGACAAGTGCTCCAAAGGGTATGCTGTTCAATCTGATTACAAAGCACATCTCAAAACCTGTGGCACTAGAGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGaGTTGAGAGCTTCATTGAGCACCAAGATGCCTGCACCGTCCGTCAGTTCAGGCCGGAGTTACAGGCTGCGCAGCCAGCATGCTCTTCAAGAACAGCTTCAAGCACAAGCCCATCTAGTGAGGCCAATTTTAGCAATATAGCTCCATTGCAAGGCTTGCCATTGCCAAAATCAAATGACCATAATAATCGACATGTCATGCTAACCCAAGAGAAGCCCTGCACTTCTGATCATGAACAACATAATTTGGAGCTTCAACTCTTGCCCTCATCAAATGCTCAAGTGAGAAGAAATTCCGAGGACAACTTCGAAACCCATTTGAAACTTTCAATAGGTACATGTAACAAGGAAGAAAGGAATGATCAGAAGAGTGCAGGAGACAGAGGAAGCTTAGAAAGGACACTGAGTGAACCTAGATTGGAAGTAGCAAGGTTGAAAGAGTTTACCAGTGAGGAGCTCAAGTTGGCCATGGCCGAAAAAGCTTACGCTGAAGAGGCAAGAAGAGAAGCTAAGCGTCAGATCGAGATAGCTGAAGTTGAGTTTGCCAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAGCTAGAAAAAGCTGAAGCCTTGAAAATACAAGCAACGAAGAAGATGAGCTCTACCCTTATGCAAGTAACTTGTCAAGTTTGCAAGCAACAGTTTCAGTCTTCCACAACACCTGGGGTTCCCTCAGAAGAGACTTCTCTTGTAACTAGTTACTTGTCCTCAGCCACCACAGAAGGGGAAGGAGAGTG 1271 0.4579 MIDNSASSGAPSSDAFASSENGVCNKRRRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQFRPELQAAQPACSSRTASSTSPSSEANFSNIAPLQGLPLPKSNDHNNRHVMLTQEKPCTSDHEQHNLELQLLPSSNAQVRRNSEDNFETHLKLSIGTCNKEERNDQKSAGDRGSLERTLSEPRLEVARLKEFTSEELKLAMAEKAYAEEARREAKRQIEIAEVEFANAKRIRKQAQAELEKAEALKIQATKKMSSTLMQVTCQVCKQQFQSSTTPGVPSEETSLVTSYLSSATTEGEGE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01342 423 SMART c2h2final6 132 159 IPR013087 -
Bva01g01342 423 SMART c2h2final6 96 126 IPR013087 -
Bva01g01342 423 SMART c2h2final6 55 77 IPR013087 -
Bva01g01342 423 MobiDBLite consensus disorder prediction 1 20 - -
Bva01g01342 423 MobiDBLite consensus disorder prediction 194 230 - -
Bva01g01342 423 MobiDBLite consensus disorder prediction 194 215 - -
Bva01g01342 423 PANTHER OS03G0310200 PROTEIN 1 423 IPR039288 GO:0009630
Bva01g01342 423 SUPERFAMILY beta-beta-alpha zinc fingers 54 152 IPR036236 -
Bva01g01342 423 MobiDBLite consensus disorder prediction 282 302 - -
Bva01g01342 423 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 423 - -
Bva01g01342 423 Gene3D Classic Zinc Finger 117 195 - -
Bva01g01342 423 MobiDBLite consensus disorder prediction 1 44 - -
Bva01g01342 423 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Bva01g01342 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Bva01g01342 423 Coils Coil 321 376 - -
Bva01g01342 423 MobiDBLite consensus disorder prediction 395 423 - -
Bva01g01342 423 Gene3D Classic Zinc Finger 33 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01342 Bva-Chr1 14595019 14597683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01342 20 423 C2H2 Transcription Factor Family AT2G01940 55.479 1.24e-147 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g01342 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01342 01 14595019 14597683 Bva01g01342 01 14595019 14597683 ECH