Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva01g00945 | ATGCCTGGCTCAGATTCACTGGAAATTGAGTGGCCGGCGAAGCACGTCAGGGACACGTTTATCAAATTCTTCGAGGAGAAGAATCATGTGAACTGGAAATCGAGCCCTGTTGTGCCTCACAATGACCCCACTCTTCTCTTTGCCAATGCTGGCATGAACCAGTTCAAGCCAATCTTTTTGGGAACAGTGGATCCAAACACTGCTTTGAGCAAGCTCACTCGTGCTTACAATACCCAAAAGTGCATTCGGGCTGGTGGCAAACACAATGATCTCGATGATGTAGGAAAAGATACCTACCATCACACCTTCTTTGAGATGCTGGGCAACTGGTCATTTGGGGATTACTTCAAAGAAGATGCCATTGGATGGGCATGGGAACTTCTCACAAAGGTTTATAAATTGCCTACAGATCGCATTTATGCCACATATTTTGGTGGTGATGAGAAGGCTGGTCTTGCTCCTGATTTTGAAGCTAGGGACATATGGCACAAGTTTTTACCTCCAAGTCGTGTTCTGCCTTTTGGCTGTAAAGATAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTATGACAGACTTGGCAACCGAGATGCAGCGAAGTTGGTTAATAATGATGATCCTACATGCATTGAGATATGGAATTTGGTGTTTATTCAGTTCAATAGGGAGGCTGATGGATCTCTCAAACCTCTGCCTGCGAAGCATGTTGATACAGGCCTGGGTTTTGAAAGATTGACCTCCATACTTCAGAACAAAATGAGCAATTATGACACTGATGTCTTCTTGCCTATCTTTGATGCAATTCAACTGGCAACTGGTGCTCGCCCCTATTCTGGGAAAGTTGGAGCAGATGATGTGGATAAAGTTGACATGGCATATAGGGTTGTTGCAGATCATATTAGAACTCTATCATTTGCCATAGCCGATGGGTCTTGTCCTGGTAATGAGGGCCGTGAATATGTTCTGAGGCGCATACTTCGTCGTGCTGTGCGATATGGACGTGAAGTCTTAAAAGCTAAAGAGGGGTTTTTTAATGGGCTTGTAAATGTTGTGGTTAAAGTGATGGGTGAGGTGTTCCCTGAGCTAAAAGAGCATGAAGTGCACATTAGGGAGGTAAttaaagaggaagaggaaagtTTCGGCAGAACCTTACTTAAGGGtattgagaaatttgagacaGCTATCCGACATGTTCAGGGAAAGACATTGAGTGGAGAGGCAACGTTTGTCTTGTGGGATACATATGGATTCCCGTTAGATCTCACTCAGCTGATGGCAGAAGAACGGGGCTTACTTGTTGATGTGGAGGGTTTCAATAGTGCCATGGAAACTGCAAGAGAGAGATCAAGAAATGCTCAAACTAAACAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCTACCTCCAGATTACATAAAAGGGGGGTTGATGCTACTGATGATAGCTTTAAGTTTGTTTGGTTTAAGGACCATGAGACTGTGATAAGAGCAATATACACAGGTTCTGAGTTCCTGGAAACTGCTAATACTGGTAGTGACATTGGTGTAGTTCTGGAATCTACAAGCTTCTATGCTGAACAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGAGTCCATCTGGCTTATTTCAAGTTCACAATGTACAAGTTTATGGAGGTTTTGTTCTTCATATTGGTTCTTTTTATGGAGGGAATGACAGATTCTCTGTGGGTGACAAAGTAGTATGTAAGGTTGACTATGGGAGACGTACCCTTATAGCCCCTAATCATACTTGCACACACATGTTAAACTTTGCTTTAAGGGAAGTACTTGGCACTCATGTTGACCAGAAAGGATCTATTGTTCTTcctgaaaaattaagatttgatttCTCTCATGGCAAGCCGGTTGATGCTGATAATTTGAGGAGAATCGAATCCATTGTTAATGAGCAAATAAAAGCTGAATTAGATGTATTCTCGAAGGAGGTTACCCTTGCTGATGCCAAGCGTATCAATGGTTTGCGAGCTGTGTTTGGAGAAGTATATCCTGATCCTGTCAGAGTTGTAGCTGTTGGACAAAAAGTGGACGATCTACTAGCGGACCCAGAAAATGACAAATGGCTATCTATTTCATCAGAATTATGCGGAGGTACTCATATATCAAACACACGAGAGGCTAAAGCTTTTGCACTTTTATCTGAGGAGGGCATTGCAAAAGGAATCCGTAGGATAACAGCTGTCACAACTGGTTGTGCTTACGAGGCAATGAAATTGGCAGAGTCACTTGACAAGGAAGTAGACGATGCGGCCAAGACAGAAGGAACGGTGCTGGAAGAGAGAGTTGCTTATCTGAAAAACTGGGTGGATGCGGCCCCAATACCAGCAGCCAAGAAAGCTGACATCAGGACTAAGATAGCCCGACTTCAGGATCAAGTGAGAAAGGCACAAAAGCTGATTGCTGAAGAAAACAAACGTAAAGCCATTAAGATGACTACCGAGAAGGCCGAACTGGCTGCTTCGGATGGAAAAACGTTTTGCATATCTTATGTGGATGTTGGTATTGATGTGGCTGCAGTTCGTGAAGCAGTTACCAAAGTCATGGAGCAGAAGGGGTTTGCTGTGATGGTTTTTAGCACTGATAAAACTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCAGAGAAAGGAAACAATAAAGGAAAGCTTGATGTTTCAGAGTGGCTCAGTAATGCCATGGGTCCGCTAAAAGGGAGGTGTGGTAAAGGAAAAGGTGGTCTTGCAACAGGACAGGGTACGGATGCATCACATGTAGATGAGGCAATAGATCTTGCAGCAACATTTGCATCCATGAAATTAAGCTG | 2867 | 0.4301 | MPGSDSLEIEWPAKHVRDTFIKFFEEKNHVNWKSSPVVPHNDPTLLFANAGMNQFKPIFLGTVDPNTALSKLTRAYNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEDAIGWAWELLTKVYKLPTDRIYATYFGGDEKAGLAPDFEARDIWHKFLPPSRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRLGNRDAAKLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGADDVDKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVNVVVKVMGEVFPELKEHEVHIREVIKEEEESFGRTLLKGIEKFETAIRHVQGKTLSGEATFVLWDTYGFPLDLTQLMAEERGLLVDVEGFNSAMETARERSRNAQTKQAGGAIVMDADATSRLHKRGVDATDDSFKFVWFKDHETVIRAIYTGSEFLETANTGSDIGVVLESTSFYAEQGGQIFDTGSLESPSGLFQVHNVQVYGGFVLHIGSFYGGNDRFSVGDKVVCKVDYGRRTLIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVFSKEVTLADAKRINGLRAVFGEVYPDPVRVVAVGQKVDDLLADPENDKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTGCAYEAMKLAESLDKEVDDAAKTEGTVLEERVAYLKNWVDAAPIPAAKKADIRTKIARLQDQVRKAQKLIAEENKRKAIKMTTEKAELAASDGKTFCISYVDVGIDVAAVREAVTKVMEQKGFAVMVFSTDKTTNKAVVCAGVPEKGNNKGKLDVSEWLSNAMGPLKGRCGKGKGGLATGQGTDASHVDEAIDLAATFASMKLS | 955 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva01g00945 | 955 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 688 | 746 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Bva01g00945 | 955 | Gene3D | - | 587 | 763 | - | - | |
| Bva01g00945 | 955 | Coils | Coil | 800 | 827 | - | - | |
| Bva01g00945 | 955 | PANTHER | ALANYL-TRNA SYNTHETASE | 1 | 954 | - | - | |
| Bva01g00945 | 955 | SUPERFAMILY | Class II aaRS and biotin synthetases | 13 | 263 | IPR045864 | - | |
| Bva01g00945 | 955 | Gene3D | Bira Bifunctional Protein; Domain 2 | 12 | 260 | IPR045864 | - | |
| Bva01g00945 | 955 | SUPERFAMILY | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 264 | 464 | IPR018162 | GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 | |
| Bva01g00945 | 955 | SUPERFAMILY | ThrRS/AlaRS common domain | 586 | 764 | IPR018163 | GO:0000166 | |
| Bva01g00945 | 955 | PRINTS | Alanyl-tRNA synthetase signature | 301 | 317 | IPR002318 | GO:0000166|GO:0005737 | |
| Bva01g00945 | 955 | PRINTS | Alanyl-tRNA synthetase signature | 325 | 338 | IPR002318 | GO:0000166|GO:0005737 | |
| Bva01g00945 | 955 | PRINTS | Alanyl-tRNA synthetase signature | 217 | 228 | IPR002318 | GO:0000166|GO:0005737 | |
| Bva01g00945 | 955 | PRINTS | Alanyl-tRNA synthetase signature | 244 | 257 | IPR002318 | GO:0000166|GO:0005737 | |
| Bva01g00945 | 955 | PRINTS | Alanyl-tRNA synthetase signature | 89 | 100 | IPR002318 | GO:0000166|GO:0005737 | |
| Bva01g00945 | 955 | SMART | tRNA_SAD_4 | 688 | 747 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Bva01g00945 | 955 | ProSiteProfiles | Alanyl-transfer RNA synthetases family profile. | 11 | 760 | IPR018165 | GO:0003676|GO:0004813|GO:0005524|GO:0006419 | |
| Bva01g00945 | 955 | Gene3D | - | 842 | 950 | - | - | |
| Bva01g00945 | 955 | Gene3D | - | 486 | 586 | - | - | |
| Bva01g00945 | 955 | Pfam | DHHA1 domain | 809 | 948 | IPR003156 | GO:0003676 | |
| Bva01g00945 | 955 | TIGRFAM | alaS: alanine--tRNA ligase | 16 | 932 | IPR002318 | GO:0000166|GO:0005737 | |
| Bva01g00945 | 955 | CDD | AlaRS_core | 13 | 259 | - | - | |
| Bva01g00945 | 955 | SUPERFAMILY | Translation proteins | 517 | 586 | IPR009000 | - | |
| Bva01g00945 | 955 | Hamap | Alanine--tRNA ligase [alaS]. | 1 | 954 | IPR023033 | GO:0004813 | |
| Bva01g00945 | 955 | Pfam | tRNA synthetases class II (A) | 16 | 588 | IPR018164 | GO:0000166|GO:0004813|GO:0005524|GO:0006419 | |
| Bva01g00945 | 955 | PANTHER | BNACNNG61840D PROTEIN | 1 | 954 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva01g00945 | Bva-Chr1 | 7260098 | 7273607 | Dispersed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva01g00945 | 01 | 7260098 | 7273607 | Bva01g00945 | 01 | 7260098 | 7273607 | ECH |