Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00920 ATGGCAAAGTCTAGCAAGAAATCAGCTTCCAAAGTTGAGTCCGCTCCAGCCGTCGTTCCAAAATCTGCGAAGAAAGGTGCTAAGCGAGAAGCTGAGGATGAGCTTGAGAAGCTGGCGAGTGCAAAGAAGCAGAAAAGAGATGAGCTTGCTGACAAGCAATTGAATGCGAaggtgcaaaagaaaaagaaaccgcAAAGTAGTTCATCTGATTCCTCTTCATCCAATTCTGAGGAGGATAAGaAACCTGCTGTTAAAGTTCCTATTCCTTCAAAGAAGCAACCTGGCCCTGCAAAGAAAAGCAAGCCAGCAAGCAGCTCCAGTTCTGACTCTTCTGATGACTCAAGTGAGGATGAAGCTCCAAAATCTAAGGTGAATGGACCTGCCGCGGGTAAGAATGGACCTGCTGCTACAACGAAGAAAGTTGATTCTAGTGAAAGCTCTGACTCTGATGACAGCAGCTCGGATGAAGATAATGCTCCAAAATCCAGGGTGAACGGAGCGGCTGCTGGTAAGAATGGACCTGCtactacaaagaaaaaagctgATTCTAGTGAAAGCTCTGATTCAGATGACAGCAGTTCAGATGAAGATTTGGCAGCTGCAGTTGCTCCTAAGAAGAAAGTGGAAGCAGTTGctccaaagaaaaaagttgagaGCAGTGACAGCTCAGAAGATGAATCAAGCGCTGAAGAAGATAATGATTCAAAAACTAAGGAAAAGATGGATGTTGATGATGATAGTTCTGAAGAAAGTGAAGAAGagccacaaaagaaaaatatcaaaggcTTGCCAAATGCTGGAAAACCTAATGTAAAAGCTGTCAAAAAGGATAGCAGTAGTGATGGTTCAGAGGATGATGATAGCTCTGAAGAGGATGACAAAGTAAAAAAGCCAAATGCTGGAAAACCTAATGTAAAAGCTGTTGAAAAGGGTAATAGTAGTGATAGCtcagatgatgaagatgatagCTCTGAAGAGGAtgagaaagtgaaaaagCCAAATGCTGCAAAACCAAGTGTAAAATCTGTCAAAAAGGATAGCAGCAGTGATAGCtcagatgatgaagatgataacTCTGAAGAGGATGAGAGAGTGAAAAAGCCGATTGCCACATCAAGTGCTGGAAAACCTGGTGTAAAAGTTGTCAAAAAGGATAGCAGTAGTGATAGCTCAGATGAAGATGATAGCTCTGAAGAGGAGGATGAGATAGTGAAAAAGCCAAAGACTACACCAAATGCTGGAAAACCTAGTGCAAAATCTGTCAAAAAGGATAGCAGTAGTGATAGCtcagatgatgaagatgatagCTCTGAGGAGGATGTAAAATCTGTCAAAAAGGCTAAAGATGTGAAGATGGTTGATGCAGCCTCACCAGAGCCAACTTCCAAGAATTTTAATTCAGCATCTGCTAAGAAAACTCCTAAGACTCCAGCTACCCCTGTAGAACAAAATTCCACAGGAAGGACACTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGAGCTGATGTGGAAAATTTCTTCATAGATTGTGGAGAAGTTGTTGATGTCCGCCTTGCTGTAGATGATGAAGGAAGGTTTAAAGGTTTTGGACATGTTGAGTTTGCTACTGCAGAAGCAGCCCAAAATGCCCTGAAGTTGAATCAAAATGAATTGTTGAGACGACCCGTCAAACTTGATCTGGCACGAGAAAGGGCCTCATATACCCCTAACAGCAGCAACTGGAGCAACTCCTTCCAGAAAGGTGGAAGAGGTCAGTCTCAAACAGTATTTGTTAGGGGTTTTGACTCATCCCTAGATGAACAGCAGATTAGGTCTAATCTGGAGGAGCATTTTAGTTCCTGTGGAGAAATTACTAGGATATCAATCCCTAAAGATTATGACACTGGTGCTTTTAAGGGGTATGCATACATGGACTTGAGTGATGCTAATGGCATAAACAAAGCATTAGAACTCAATCAATCAGAGTTAGGCGGTTATCCATTGATGGTTGAAGAAGCAAGGCCTCGGGATTCTCAGGGTGGCAGTGCTAGAGGTGGAAGAGGTGGTAGAGATGGTGGCGGCCGTGGTGGAAGAGGTGGTAGAGACAGTGGTGGCCGGGGTGGAAGAGGTGATCGTGGAAGAGGTAACCGCGGTGGAAGGGGTGGCCGTGGAACCCCCTTTAAACAAAGTTTCAGTGCAGGAGGAACAGGGACCAAGACTACTTTCGCAGATGACTA 2219 0.4092 MAKSSKKSASKVESAPAVVPKSAKKGAKREAEDELEKLASAKKQKRDELADKQLNAKVQKKKKPQSSSSDSSSSNSEEDKKPAVKVPIPSKKQPGPAKKSKPASSSSSDSSDDSSEDEAPKSKVNGPAAGKNGPAATTKKVDSSESSDSDDSSSDEDNAPKSRVNGAAAGKNGPATTKKKADSSESSDSDDSSSDEDLAAAVAPKKKVEAVAPKKKVESSDSSEDESSAEEDNDSKTKEKMDVDDDSSEESEEEPQKKNIKGLPNAGKPNVKAVKKDSSSDGSEDDDSSEEDDKVKKPNAGKPNVKAVEKGNSSDSSDDEDDSSEEDEKVKKPNAAKPSVKSVKKDSSSDSSDDEDDNSEEDERVKKPIATSSAGKPGVKVVKKDSSSDSSDEDDSSEEEDEIVKKPKTTPNAGKPSAKSVKKDSSSDSSDDEDDSSEEDVKSVKKAKDVKMVDAASPEPTSKNFNSASAKKTPKTPATPVEQNSTGRTLFVGNLSYSVERADVENFFIDCGEVVDVRLAVDDEGRFKGFGHVEFATAEAAQNALKLNQNELLRRPVKLDLARERASYTPNSSNWSNSFQKGGRGQSQTVFVRGFDSSLDEQQIRSNLEEHFSSCGEITRISIPKDYDTGAFKGYAYMDLSDANGINKALELNQSELGGYPLMVEEARPRDSQGGSARGGRGGRDGGGRGGRGGRDSGGRGGRGDRGRGNRGGRGGRGTPFKQSFSAGGTGTKTTFADD 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00920 739 MobiDBLite consensus disorder prediction 200 223 - -
Bva01g00920 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 557 IPR000504 GO:0003723
Bva01g00920 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 590 662 IPR000504 GO:0003723
Bva01g00920 739 PANTHER BNAA08G02930D PROTEIN 320 689 - -
Bva01g00920 739 MobiDBLite consensus disorder prediction 723 739 - -
Bva01g00920 739 MobiDBLite consensus disorder prediction 688 712 - -
Bva01g00920 739 MobiDBLite consensus disorder prediction 23 58 - -
Bva01g00920 739 MobiDBLite consensus disorder prediction 439 453 - -
Bva01g00920 739 CDD RRM2_NUCLs 589 667 IPR034350 -
Bva01g00920 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 488 564 IPR000504 GO:0003723
Bva01g00920 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 588 669 IPR000504 GO:0003723
Bva01g00920 739 CDD RRM1_NUCLs 489 565 IPR034349 -
Bva01g00920 739 MobiDBLite consensus disorder prediction 667 739 - -
Bva01g00920 739 Gene3D - 587 724 IPR012677 -
Bva01g00920 739 Gene3D - 458 586 IPR012677 -
Bva01g00920 739 MobiDBLite consensus disorder prediction 459 484 - -
Bva01g00920 739 Coils Coil 21 55 - -
Bva01g00920 739 MobiDBLite consensus disorder prediction 1 484 - -
Bva01g00920 739 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 320 689 - -
Bva01g00920 739 SUPERFAMILY RNA-binding domain, RBD 585 695 IPR035979 GO:0003676
Bva01g00920 739 SUPERFAMILY RNA-binding domain, RBD 482 586 IPR035979 GO:0003676
Bva01g00920 739 SMART rrm1_1 589 665 IPR000504 GO:0003723
Bva01g00920 739 SMART rrm1_1 489 560 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00920 Bva-Chr1 6791445 6797144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00920 452 640 Eukaryotic Initiation Factors Gene Family AT1G22760 27.368 5.03e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00920 01 6791445 6797144 Bva01g00920 01 6791445 6797144 ECH