Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00484 ATGGTTTTTACCTCCATCCCAGCTTATCTTGATCCAGCCAACTGGCAACAACAGCAACCGAGTCATCAAAGTGGAAGCAGCGGCCTGAGTTCTCAGCTTCTTCCACCACTACCGGCACCGGCACCGGCACCACCCACGCAACCTCATGGTGCCAGTGGCACGGGCTCCATCAGGCCAGGGTCTCTGGCTGATCGAGCCCGTTTGGCTAACATACCTATGCCAGAGACTGCGCAAAAATGCCCACGATGTGATTCCACAAACACCAAGTTTTGCTACTTCAACAACTACAGCCTCTCGCAGCCAAGGCACTTCTGCAAGACCTGCAGAAGGTACTGGACAAGAGGCGGGGCCTTGAGAAACGTCCCCGTGGGAGGCGGCTGCCGGAGGAACAAGAGAACCAAAGGAAGCAGCAGCTCAAAGTCTCCGGCAAGCTCGGATCGCCAAACGGGTAGCGCTAGTTCAACAAACTCAGCCTCTTCTAACAGCGGTTCTGCTGCTGATATAGTAGGTCTCGGACCTCAGGTTCCACCGCTCAGGTTCATGGCCCCGCTACATCAACTAACGGATTTTGCTGCTGGAGACATTGCCTTAAACTATGGCCTCAATTACAGCACAATTTCAGCGCCAATGGGGGGAGTAGGTgacttaaattttcatataggTGGTGCTTTAGGTGGCGGAGCAAGTGGCGGCAACGGTGGTGCCGGTGGCAGCTCTATCTTCTCAGCAGCTGGATTGGAACAATGGCGGGTGCCACAAACACAGCAATTTCCACTTCTAGCTGGCTTGGAAGGTTCACATGGGTTGTACCAATTTGAAGGTGGTGCTGAGGGACCGGGATATGGCGGTGCTGCTGGCACAGCGGCTCAGGTCCGGCCAAGGGCAACTACTTCCGGGCTGATAAGCCAGCTGGCTTCAGTGAAAATGGAAGACAATCGGGAACTGAATTTGTCAAGACAGTTCTTGGGAGGAATCAGTAATCCAGCTGGGAGTGAGCAGTATTGGAGTGCTAACACTGGTGCTACAGCAGCGTGGACAGATCTCTCTGGGTTTAGTTCTTCCTCCACTACCAGCAATcaattata 1085 0.529 MVFTSIPAYLDPANWQQQQPSHQSGSSGLSSQLLPPLPAPAPAPPTQPHGASGTGSIRPGSLADRARLANIPMPETAQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSSKSPASSDRQTGSASSTNSASSNSGSAADIVGLGPQVPPLRFMAPLHQLTDFAAGDIALNYGLNYSTISAPMGGVGDLNFHIGGALGGGASGGNGGAGGSSIFSAAGLEQWRVPQTQQFPLLAGLEGSHGLYQFEGGAEGPGYGGAAGTAAQVRPRATTSGLISQLASVKMEDNRELNLSRQFLGGISNPAGSEQYWSANTGATAAWTDLSGFSSSSTTSNQL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00484 361 MobiDBLite consensus disorder prediction 122 165 - -
Bva01g00484 361 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Bva01g00484 361 MobiDBLite consensus disorder prediction 13 33 - -
Bva01g00484 361 MobiDBLite consensus disorder prediction 13 60 - -
Bva01g00484 361 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Bva01g00484 361 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Bva01g00484 361 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 13 357 - -
Bva01g00484 361 MobiDBLite consensus disorder prediction 136 165 - -
Bva01g00484 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 357 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00484 Bva-Chr1 3814383 3816110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00484 1 338 C2C2-Dof Transcription Factor Family AT5G02460 41.397 4.78e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva01g00484 zf-Dof 7.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00484 - - rcu:8279572 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00484 01 3814383 3816110 Bva01g00484 01 3814383 3816110 ECH
Bva01g00484 01 3814383 3816110 Bva02g01329 02 17088344 17090090 PCT