Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach3g02391 | ATGGCTGCTCTGGACGAGGGATTGAAGAAGTTGGAGTATTTGTCCCTCGTATCGAAGGTGTGCACGGAGCTGGAGTCCCATACAGGAACCGGCGACAAGGTACTGGCTGAATTTATTACTGACTTGGGGCATCATTCGGAAACTGTGGAGGAATTTGACGCCAATTTGAAAGAAAATGGGGCGGAATTTCCAGATTACTTTGTGAAGACACTACTCACTATCATCCATGCTATTCTTCCTCCAGAGTCCAAGTCCAAATCCGAAAGGGAAAACGAGTCGAAGAAAGACAACGGTAACACAGATTCTAGCAAGATTAAATTCAAGGCCTTGGCCATTGCAGATGATAGGGATCGAGTTAAGGAGCTCCAGAGAGAGATTGAAATTGAGGCTCAACGTGGGCAAAGAGAACACGTTGAAGAAGATAGATATAGAGACAGAGAGAAAAATAGAGATAGAGAGAAGAGAGACAGGCACAGGGACAGGTATGAAAGAGAGAGAGAGAGAGATTTTGAAGATGAGGTTGAAAGAAGGGATTACAGGAGTAAGGGAAGGCATAGAGATAGACACGACAGGCGGAGGAGAGATGGCTATGAATATGAAGAGGATAGAGATGGAAAGCACAAGAGTGATGAAGATGGAGATATCAGAGATCATAATACAAGGCGTGGCTCTAAAGAACCTGAATTGTATAGGGTTTATAAGGGCAGGGTGTCAAGAGTGATGGATTCAGGATGCTTTGTGCAATTAAGTGATTTTAGAGGGAAGGAAGGTTTGGTGCATGTTTCTCAGATTGCTACTCGAAGGATTGGGAATGCTAAGGACATTGTGAAGCGGGACCAGGAGGTTTATGTCAAGGTAATCTCAATTTCAGGTAACAAGTTGAGTCTGTCAATGAGGGATGTTGATCAGCATACTGGTAAGGATCTTCTTCCTCTAAAGAAAAGCTTGGAGGATGATGCTTTCCGAATGAATCCACAAGATTCAAAAGATGGCCCAGGAGCCAGGATAGGTCTTTCAGGGATCAGGATTGTGGAAGAGGATGATGTTGGTTCTTCACGTAGGCCTCTAAAGAGGATGAGCTCTCCAGAGAGATGGGAAGCAAAGCAGTTAATTGCTTCAGGTGTTTTAGGTGTTACAGAGTATCCTACATACGATGAGGAGGGAGATGGTGTGATGTATCAAGAGGAAGGTGCTGAAGAAGAGCTTGAGATTGAGCTGAATGAGGACGAACCTGCCTTTTTGCAAGGACAGAGTAGATATTCAATGGACATGTCACCTGTTAAGATTTTCAAGAATCCGGAAGGCTCTCTTAGTCGTGCTGCTGCTCTTCAGTCTGCACTTATAAAGGAGCGTAGAGAAGTACGCGAACAACAACAACGCACGATGCTTGACTCAATTCCAAAGGATCTCAATCGTCCTTGGGAAGATCCTATGCCAGAGACAGGTGAAAGGCATCTTGCACAAGAGCTTAGGGGTGTTGGCTTATCAGCCTATGACATGCCCGAGTGGAAGAAGGATGCTTATGGCAAAACCATCACTTTCGGACAAAGGTCAAAGCTCTCCATTCAGGAACAAAGGCAGAGCTTACCAATCTACAAATTAAAGAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTTTTGGTGGTCATTGGTGAGACAGGTTCAGGTAAGACAACTCAGGTCACACAGTATCTCGCCGAAGCTGGTTATACTACAAGGGGTAAAATTGGATGTACTCAGCCCCGTAGGGTGGCTGCCATGTCAGTCGCAAAGAGAGTTGCAGAAGAGTTTGGTTGCCGATTGGGGGAGGAAGTTGGTTATGCCATTAGGTTTGAGGATTGCACTGGGCCAGATACTGTAATCAAGTACATGACAGATGGTATGCTTCTGAGGGAAATTTTAGTTGATGAAAGTTTGTCTCAGTATTCTGTTATAATGCTTGATGAAGCCCATGAAAGAACTATTCATACTGATGTTCTTTTTGGACTACTGAAGCAGCTAGTGAAACGTAGACCTGATTTGAGATTGATCGTCACATCTGCTACTCTAGATGCAGAGAAATTTTCTGCTTATTTTTTTAACTGTAACATCTTTACAATACCCGGGAGAACCTTTCCTGTGGAGATACTTTATACTAAGCAACCCGAAAGTGATTATTTAGATGCAGCTCTAATCACCGTTCTTCAGATCCACTTGACAGAACCTGAAGGAGACATCCTTCTCTTCTTGACTGGTCAAGAGGAAATTGATTTTGCTTGCCAGTCTCTCTATGAGAGAATGAAAGGATTAGGTAAAAATGTTCCTGAACTGATCATTTTACCCGTCTATAGTGCCCTTCCTAGTGAAATGCAATCTAGAATATTTGATCCTGCTCCGCCCGGAAAGAGGAAGGTGGTTGTGGCTACTAATATTGCTGAGGCTTCTTTAACAATTGATGGGATTTTTTATGTTATTGATCCTGGATTTGCGAAGCAAAATGTATATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCGGCTAAACAAAGAGCTGGGCGGGCAGGGCGTACTGGACCTGGGAAGTGCTATCGCCTCTATACAGAGAGTGCATATAGAAATGAGATGTCTCCTACTACAATTCCAGAAATTCAAAGGATAAATCTTGGATCGACTACCCTATCTATGAAAGCTATGGGGATAAATGATCTTCTTTCCTTTGATTTTATGGATCCACCTTCACCCCAAGCTCTCATTTCTGCCATGGAACAGCTGTATAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGTAGAAAGATGGCAGAATTTCCTATGGATCCACCATTGTCCAAGATGCTTCTTGCCAGTGTAGACCTTGGGTGCAGTGATGAGATCTTGACCATAATTGCGATGATTACGACTGGAAATATATTTTACAGGCCTAGGGAAAAGCAAGCCCAAGCAGATCAGAAAAGGGCAAAGTTTTTCCAGCCAGAGGGTGACCATCTTACTCTGCTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGACCCTGGTGTTTTGAGAACTTTGTTCAATCTCGATCTTTGAGAAGGGCACAGGACGTCAGGAAACAGCTTCTCAGCGTCATGGATAAGTACAAATTGGATGTTGTAAGCGCTGGAAAGAACTTCACTAAGATTAGGAAGGCTATCACTGCAGGTTTCTTTTTCCATGCTGCTAGAAAGGACCCCCAAGAGGGTTACAGAACCCTAGTTGAGAATCAGCCTGTATATATCCATCCCAGTTCGGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCATGAGCTAGTGATGACAACTAAGGAATATATGCGTGAAGTCACTGTCATAGACCCCAAATGGCTTGTCGAATCGGCTCCTAGGTTTTTCAAAGTGGCAGATCCTACGAAGATGAGCAAGCGGAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATATCATGAGCCAAATTCATGGCGATTGAGTAAACGCCGTGCATGATGTGTCTTTTTTGTCCTTCCTTCGAGACATTGCATGCATTTCATCTGCTTCCTCTCACACTAAGTCTTGGACAATGTTCTATCTTGCATCTAGTTTAAAATGTAAAATTTGCTAGTATGATTATTTCATTGGTTCTGCTTGTAGTAAACCTCAA | 3703 | 0.4332 | MAALDEGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHHSETVEEFDANLKENGAEFPDYFVKTLLTIIHAILPPESKSKSERENESKKDNGNTDSSKIKFKALAIADDRDRVKELQREIEIEAQRGQREHVEEDRYRDREKNRDREKRDRHRDRYERERERDFEDEVERRDYRSKGRHRDRHDRRRRDGYEYEEDRDGKHKSDEDGDIRDHNTRRGSKEPELYRVYKGRVSRVMDSGCFVQLSDFRGKEGLVHVSQIATRRIGNAKDIVKRDQEVYVKVISISGNKLSLSMRDVDQHTGKDLLPLKKSLEDDAFRMNPQDSKDGPGARIGLSGIRIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVLGVTEYPTYDEEGDGVMYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSAYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPMDPPLSKMLLASVDLGCSDEILTIIAMITTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSVMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVESAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA | 1182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach3g02391 | 1182 | CDD | SF2_C_RHA | 706 | 867 | - | - | |
| Bach3g02391 | 1182 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 720 | 900 | IPR001650 | - | |
| Bach3g02391 | 1182 | Coils | Coil | 112 | 132 | - | - | |
| Bach3g02391 | 1182 | Pfam | Helicase conserved C-terminal domain | 727 | 859 | IPR001650 | - | |
| Bach3g02391 | 1182 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 644 | 653 | IPR002464 | - | |
| Bach3g02391 | 1182 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 539 | 702 | IPR014001 | - | |
| Bach3g02391 | 1182 | SMART | ha2_5 | 920 | 1010 | IPR007502 | GO:0004386 | |
| Bach3g02391 | 1182 | Gene3D | - | 705 | 879 | IPR027417 | - | |
| Bach3g02391 | 1182 | Gene3D | - | 501 | 704 | IPR027417 | - | |
| Bach3g02391 | 1182 | CDD | GH2-like_DHX8 | 11 | 78 | - | - | |
| Bach3g02391 | 1182 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 705 | 879 | - | - | |
| Bach3g02391 | 1182 | MobiDBLite | consensus disorder prediction | 83 | 102 | - | - | |
| Bach3g02391 | 1182 | Pfam | S1 RNA binding domain | 231 | 292 | IPR003029 | GO:0003676 | |
| Bach3g02391 | 1182 | Coils | Coil | 440 | 460 | - | - | |
| Bach3g02391 | 1182 | MobiDBLite | consensus disorder prediction | 191 | 227 | - | - | |
| Bach3g02391 | 1182 | MobiDBLite | consensus disorder prediction | 133 | 227 | - | - | |
| Bach3g02391 | 1182 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 519 | 1052 | IPR027417 | - | |
| Bach3g02391 | 1182 | FunFam | ATP-dependent RNA helicase DHX8 | 225 | 310 | - | - | |
| Bach3g02391 | 1182 | SMART | ultradead3 | 527 | 711 | IPR014001 | - | |
| Bach3g02391 | 1182 | CDD | S1_DHX8_helicase | 230 | 306 | - | - | |
| Bach3g02391 | 1182 | PANTHER | ATP-DEPENDENT RNA HELICASE | 460 | 1144 | - | - | |
| Bach3g02391 | 1182 | Gene3D | - | 904 | 1003 | - | - | |
| Bach3g02391 | 1182 | SUPERFAMILY | Nucleic acid-binding proteins | 230 | 306 | IPR012340 | - | |
| Bach3g02391 | 1182 | Gene3D | - | 224 | 310 | IPR012340 | - | |
| Bach3g02391 | 1182 | Coils | Coil | 148 | 168 | - | - | |
| Bach3g02391 | 1182 | MobiDBLite | consensus disorder prediction | 133 | 181 | - | - | |
| Bach3g02391 | 1182 | Pfam | DEAD/DEAH box helicase | 535 | 687 | IPR011545 | GO:0003676|GO:0005524 | |
| Bach3g02391 | 1182 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1067 | 1142 | IPR011709 | - | |
| Bach3g02391 | 1182 | SMART | helicmild6 | 755 | 859 | IPR001650 | - | |
| Bach3g02391 | 1182 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 904 | 1003 | - | - | |
| Bach3g02391 | 1182 | CDD | DEXHc_DHX8 | 524 | 702 | IPR044762 | GO:0000398|GO:0003724|GO:0005524 | |
| Bach3g02391 | 1182 | ProSiteProfiles | S1 domain profile. | 230 | 299 | IPR003029 | GO:0003676 | |
| Bach3g02391 | 1182 | Pfam | Helicase associated domain (HA2) | 921 | 1009 | IPR007502 | GO:0004386 | |
| Bach3g02391 | 1182 | SMART | S1_6 | 228 | 299 | IPR022967 | - | |
| Bach3g02391 | 1182 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 495 | 704 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach3g02391 | Bach-Chr3 | 30270248 | 30274287 | Dispersed/Wgd |