LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach3g02330	ATGTTCCTTAACATTAGCCCTGTTTGCCAGTGCCAGGAACACATCCTTGAAGATTTCTTTCCTTGTGTTGGTCCAGTCATAATGCCATTGAGAGATATTCTTCACGAGCTCATGGAGATGAGAGATGGCATAAGAAATATATCTGGAAGAGGGCGACAGGCAAGGCGTATGAATCGCCGTGGAAAATCACATATTGCACCTGAGTGGTCTTCATCACCACCATCATCGTCATCATTGATAATGACTCAGGAGAGCCACTGGGCAAACTTACCCCCTGAGTTGTTATTAGACATTATACAAAGAGTAGAAGCGAGTGAAACTTCATGGCCTGCCAGGAGAGCCGTTGTAGCTTGTGCCTCTGTCTGTAGAACCTGGAGGGAGATAACCAAGGAGGTGGTCAAGACACTGGAACAGTGTGGGTGCTTTACCTTCCCTATATCACTGAAGCAGCCCGCGCCAAGAGAGAATCCAATACAGTGTTTTATTAGGAGAGAAAGGATGACCGCAACATATTATCTATATCTTGGTCTGAGCCCTGCTCTTTCTGGGGACATGAGCAAACTGCTATTGGCAGCAAAGAAGATTAGAAAAGCAACATGTACAGAATTTTTAATATCCTTGGTAGCGGATGATTTCTCTCGAGCTACCAATACTTACGTTGGAAAGCTGCGGTCTAATTTTCTGGGCACCAAGTTTATGGTCTTGGATAGTCAGCCACCGCATGTTTCTTCCCTTCAATCAAATTGTAAATTGCAGCAAAGAATCCATTTAAAGCAGGCACTTCCGAGGGTTTCTGCAGTTAATTATCATGTGGCTACCATATGTTATGAGCTCAATGTTCTCCGCACGAGAGGTCCAAGGAGAATGAGGTGTACCATCAACTCAATCCCCATATCTGCAGTCCAGGAAGGGGGCGCTGCCCCTACTCCTTTGAAGTTTACTGACTGCCTTGACGAGAATTTATCTACTTTGCCCATTTCGAAAGGAAAGAAGCCAGGAGTTCAGTTTAGCTCCAGTAGCATTGAGAAGCCTCCAGAATCAACCCACCATGCAAGGGAACCACTGATTTTGAAAAATAAATCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTGAATTTCAAAGGACGAGTGACGGTGGCCTCTGTCAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTCACCATAATATTTCAGTTGCTGAACAAGATAAAGTGATACTGCAATTTGGAAAAATTGGGAAGGACATATTCACAATGGATTACCGTTACCCTCTCTCTGCTTTTCAAGCATTTGCAATCTGCTTGAGTAGCTTTGACACTAAACCAGCTTGTGAATGA	1344	0.4464	MFLNISPVCQCQEHILEDFFPCVGPVIMPLRDILHELMEMRDGIRNISGRGRQARRMNRRGKSHIAPEWSSSPPSSSSLIMTQESHWANLPPELLLDIIQRVEASETSWPARRAVVACASVCRTWREITKEVVKTLEQCGCFTFPISLKQPAPRENPIQCFIRRERMTATYYLYLGLSPALSGDMSKLLLAAKKIRKATCTEFLISLVADDFSRATNTYVGKLRSNFLGTKFMVLDSQPPHVSSLQSNCKLQQRIHLKQALPRVSAVNYHVATICYELNVLRTRGPRRMRCTINSIPISAVQEGGAAPTPLKFTDCLDENLSTLPISKGKKPGVQFSSSSIEKPPESTHHAREPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPHHNISVAEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach3g02330	447	PANTHER	TUBBY-RELATED	56	445	-	-
	Bach3g02330	447	Gene3D	Tubby Protein; Chain A	145	447	IPR025659	-
	Bach3g02330	447	MobiDBLite	consensus disorder prediction	330	353	-	-
	Bach3g02330	447	Pfam	Tub family	148	442	IPR000007	-
	Bach3g02330	447	CDD	F-box_AtTLP-like	87	131	-	-
	Bach3g02330	447	ProSitePatterns	Tub family signature 2.	432	447	IPR018066	-
	Bach3g02330	447	Gene3D	-	81	135	-	-
	Bach3g02330	447	ProSitePatterns	Tub family signature 1.	375	388	IPR018066	-
	Bach3g02330	447	SUPERFAMILY	F-box domain	81	131	IPR036047	GO:0005515
	Bach3g02330	447	MobiDBLite	consensus disorder prediction	49	77	-	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	404	423	IPR000007	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	425	447	IPR000007	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	357	374	IPR000007	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	219	243	IPR000007	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	268	295	IPR000007	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	203	219	IPR000007	-
	Bach3g02330	447	PRINTS	Tubby superfamily signature	375	391	IPR000007	-
	Bach3g02330	447	SUPERFAMILY	Tubby C-terminal domain-like	137	447	IPR025659	-
	Bach3g02330	447	Pfam	F-box domain	87	133	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach3g02330	Bach-Chr3	29860347	29862738	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Bach3g02330		Tub	5.2e-104	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach3g02330	3	29860347	29862738	Bach3g02330	3	29860347	29862738	ECH