Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02263 ATGACCACGGTTGGAGACAATATTGTCCACTGGCGCCGCCCGAGTGTACAAAATGAGTCCCCTTCTGAGCTGACGACTAGACAAGATTCCGAGAATCCACCTGAGCTTGGCGAGTTTTCTTTTTTGGATAGAGGGGAGAGTATTATTATTAAGATGCAATCAAACGGCTCTGATTCCCAGCAGTCCGAACAGAATCAACGGCAAAAACAATCGCAGACGCAGACACACACGCCACCACCGCCACTACCACTGCCACAGCAGTGGATGCCGATGCAGTACCCTGCGGCGGCTATGGTAATGCAGCATCACATGTTACCACCTCAACATTACGCGCCGCCGCCACCGCAGCACTATATGCCTTATCATCAGTACCAGCAGTTACCACATGTACCTCATCCGCAGCAGCATCAACATCGAGAATCAACCGGCGAGAACAAGACGATCTGGGTCGGCGATTTACATCATTGGATGGACGAGAATTATCTGCATCGCTGCTTCGCTTCTACGGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGTCTGTCGGAGGGTTATGGATTTGTGGAATTCTATTCACATGCTACAGCTGAGAAAGTTTTACAGAATTATGCTGGCATTTTGATGCCCAATACAGAACAACCTTTCCGCCTAAACTGGGCAGCATTTAGCACGGGTGATAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTAGGAGATTTAGCCGCAGATGTAACAGATAGCATGTTGCATGAAACATTTTCTAGTAGATATCCTTCTGTTAAAGCTGCCAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCACAGGCCATGTCTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCACGAAAATCATCTGGCTATCAACAGCAAGGAGGCCATGTGTCAAATGGCACATCTAACCAATCTGAAGCAGATTCAACAAACACGACTATATTTGTTGGTGGACTCGACCATAATGTTATTGATGAAGATCTTAGGCAACCCTTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGCTGTGGCTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGCTAAATGGAACAACTATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGCAGTTTAGAATGGATTTTGGCAGCCCATGGAGCGGGGCGTACTATGGAGGCCCTGTGTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGCATATATGCTGCTGCATATGGGGCTTACCCTGTCTATGGTGGCCACCAACAGCAAGGGCGGAATGATGTGATAGATGAGCTGGCAAGTGTTGGGACCAGGGGCACACTTTGGCGTAGGGTGACAGGGATGCAAAATGCTTATCTTGAAATCTTCACCGTTGATCATGAGGACTCCAACGGGTGA 1554 0.4678 MTTVGDNIVHWRRPSVQNESPSELTTRQDSENPPELGEFSFLDRGESIIIKMQSNGSDSQQSEQNQRQKQSQTQTHTPPPPLPLPQQWMPMQYPAAAMVMQHHMLPPQHYAPPPPQHYMPYHQYQQLPHVPHPQQHQHRESTGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWAAFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQGGHVSNGTSNQSEADSTNTTIFVGGLDHNVIDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQQFRMDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQGRNDVIDELASVGTRGTLWRRVTGMQNAYLEIFTVDHEDSNG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02263 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 418 IPR000504 GO:0003723
Bach3g02263 517 MobiDBLite consensus disorder prediction 317 342 - -
Bach3g02263 517 CDD RRM3_NGR1_NAM8_like 345 416 - -
Bach3g02263 517 Gene3D - 145 225 IPR012677 -
Bach3g02263 517 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 135 422 - -
Bach3g02263 517 SUPERFAMILY RNA-binding domain, RBD 111 226 IPR035979 GO:0003676
Bach3g02263 517 Gene3D - 227 332 IPR012677 -
Bach3g02263 517 FunFam Polyadenylate-binding protein RBP47C isoform A 238 314 - -
Bach3g02263 517 SUPERFAMILY RNA-binding domain, RBD 238 419 IPR035979 GO:0003676
Bach3g02263 517 MobiDBLite consensus disorder prediction 319 342 - -
Bach3g02263 517 MobiDBLite consensus disorder prediction 1 88 - -
Bach3g02263 517 CDD RRM2_SECp43_like 238 317 - -
Bach3g02263 517 MobiDBLite consensus disorder prediction 13 33 - -
Bach3g02263 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 226 IPR000504 GO:0003723
Bach3g02263 517 FunFam Polyadenylate-binding protein RBP47 331 449 - -
Bach3g02263 517 FunFam polyadenylate-binding protein RBP47 isoform X2 97 235 - -
Bach3g02263 517 CDD RRM1_SECp43_like 147 227 - -
Bach3g02263 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 318 IPR000504 GO:0003723
Bach3g02263 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 215 IPR000504 GO:0003723
Bach3g02263 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 411 IPR000504 GO:0003723
Bach3g02263 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 310 IPR000504 GO:0003723
Bach3g02263 517 Gene3D - 333 449 IPR012677 -
Bach3g02263 517 SMART rrm1_1 147 222 IPR000504 GO:0003723
Bach3g02263 517 SMART rrm1_1 240 314 IPR000504 GO:0003723
Bach3g02263 517 SMART rrm1_1 347 414 IPR000504 GO:0003723
Bach3g02263 517 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02263 Bach-Chr3 29459569 29467473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02263 221 425 Eukaryotic Initiation Factors Gene Family AT4G34110 30.093 4.20e-19 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g02263 3 29459569 29467473 Bach12g00222 12 1511855 1515482 BWGD
Bach3g02263 3 29459569 29467473 Bach3g02263 3 29459569 29467473 ECH