Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02234 ATGGCCCTTCTGCTAGACAATTGCGAGGGCATTTTGCTCTCTTTAGACTCTCACAAGTCGGTGCCAGCACCCTTCCTAACCAAGACATACCAGCTGGTAGATGATCCAACCACCGATCACATAGTCTCTTGGGGTGAAGACGATACCACCTTCGTCGTTTGGCGTCCGCCAGAGTTCGCTAGGGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGAAAGATTGTACCGGACAGATGGGAGTTTGCAAACGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGTGAGATCCATAGAAGAAAAACTGCTCAGCCTCAGCAGGTGGCTATCAATCATCACAACCATCATCATCCCCATTCTCCCCTAGGAGTCAACGTCCCCACTTTTTTTCCCTTCAACAGAGTCAGCATCTCTCCTCCCAATGACTCTGATGACCAAGCCAATTGGTGTGATTCACCGCCACGCACTTCTCCAAGATCAGCAGTGGCAGCTACCACTGTTTCTTCAGTCATTAATGGCGCTAACTACAATAGTTCTGTCACTGCGCTGTCGGAGGACAACGAAAGACTCAGGCGAAGCAACAACATGCTTATGTCTGAGCTTGCCCACATGAAGAAGCTTTATAACGACATAATCTACTTTGTGCAGAATCATGTGAAGCCTGTCGCTCCGAGCAATTCTTACCCTTCTTCTTTACTGCTATGCAATACACCACAACAACCTTTAGCAGCATCTCCTTTAACTAGTTCGAATATTTCCATGGTGCAAAGGCCTATGAACCAGCTTCTGGGGTTTTATTCTACCAACCCCAAGCAACCTCCTCAAGCTCATGCGTTGAACTCACCTACCACTACATCCAAGAGCTCCATAACCATTGTTGAAGAGCCTAGCAGTAACTGTTGCAAGACGAAGCTTTTTGGTGTATCCCTTCAATCCAAGAAGAGGGTGCACCCCGATTATGGTTCTAATCTCGTTAGTTTGGAATCGAACAAGACTCGTTTGGTCTTGGGAAAGGATGACTTGGGCTTGAATCTTATGCCACCTTCGACTTGTTAG 1098 0.4681 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQVAINHHNHHHPHSPLGVNVPTFFPFNRVSISPPNDSDDQANWCDSPPRTSPRSAVAATTVSSVINGANYNSSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYPSSLLLCNTPQQPLAASPLTSSNISMVQRPMNQLLGFYSTNPKQPPQAHALNSPTTTSKSSITIVEEPSSNCCKTKLFGVSLQSKKRVHPDYGSNLVSLESNKTRLVLGKDDLGLNLMPPSTC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02234 365 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bach3g02234 365 Coils Coil 194 214 - -
Bach3g02234 365 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 285 IPR027725 -
Bach3g02234 365 Gene3D - 17 116 IPR036388 -
Bach3g02234 365 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bach3g02234 365 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bach3g02234 365 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bach3g02234 365 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bach3g02234 365 FunFam Heat stress transcription factor B-4 17 115 - -
Bach3g02234 365 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bach3g02234 365 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02234 Bach-Chr3 29265232 29266445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02234 1 364 HSF AT1G46264 56.218 1.94e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bach3g02234 HSF_DNA-bind 3.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g02234 3 29265232 29266445 Bach12g00256 12 1712063 1713288 BWGD
Bach3g02234 3 29265232 29266445 Bach3g02234 3 29265232 29266445 ECH