Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02229 AGAAAAAAAAAATTCGGTTTCTCCTCCGTCTTCTTACCCCTCGTACCGTTCGGATCTCCGGCGGGTTTATCCCCTTGTTACCAGAAAAACCATAAAAATTGTTCCAAATCTAGGGCTTAGATAATCATCAATTTTGGCTTCCAACTGTTAGTGTTGTTGTTATCTCTCTGGGGTTAGTCTTCGATAGTTAGAGGAGAAGGAACAGAAAAAAAAGGTTTGTACTTTTGAGTGCGATGGCGCAGATTCAGGTGCAGCATCAGAGTCCTCCCTCGGCTCCCAACGGTCTGGCACCGACTCCTGGCGCGAACCAGTTTGTGACTACGTCGTTGTATGTCGGGGACCTTGACCAGAATGTGAACGATTCGCAGCTTTACGATCTCTTCAACCAGGTCGGACAAGTTGTTTCGGTTCGGGTCTGCAGGGACTTGACCAGCCGTCGGTCCCTCGGTTACGGATATGTTAATTACAGCAACCCTCAGGATGCGGCAAGAGCAATTGACGTACTGAATTTCACTCCATTGAACAGCAAACCAATTAGGATCACGTATTCTCATAGAGATCCTAGTATTCGGAAGAGTGGTACAGCAAATATATTTATTAAGAACTTAGACAAGGGCATTGACCACAAGGCCTTACATGAGACCTTTTCCGCTTTTGGAAGTATTCTTTCTTGCAAGATAGCAACCGATGCTTCTGGCCAATCCAAAGGCTATGGTTTTGTACAATTTGACAATGAAGAGTCTGCACAGAATGCAATTGACAAGTTAAATGGCATGCTGTTAAATGATAAACAGGTCTATGTGGGACATTTCCTGCGAAAGCAGGAGAGAGAAAATGTTTTAAGTAGGACAAAATTTAACAATGTCTATGTGAAAAACCTGTCAGAGTCTATGACAGATGAAGACTTGAAGAAAATTTTTGGAGAATATGGGACCATTACTAGTGCTATTGTAATGCGAGATGCAGATGGCAAATCTAAGTGTTTTGGTTTTGTCAATTTTGAAAATGCGGATGATGCTGGTACAGCTGTTGAGGCACTTAATGGGAAGAAATTGGATGATAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAAAGAGAGCTTGAACTGAAAGGAAAATTTGAGCAGAGTGTGAAGGCAGATGTTGACAAATATCAAGGCTTAAACTTGTATCTCAAGAACTTGGATGATAGCATTGATGATGAAAAACTTAAGGAACTGTTCTCTGAGTTTGGTACAATAACTTCATTCAAGGTTATGCGGGACCCAAATGGAATCAGTAGAGGATCAGGCTTTGTTGCATTTTCGACTCCTGAGGAAGCATCTCGAGCTCTTGCAGAGATGACTGGTAAAATGATTGCTGGAAAACCTCTCTATGTTGCTGTTGCACAGAGGAAAGAAGACAGAAGAGCAAGGTTACAGGCACAATTTTCGCAAATGAGGCCTATTGCGATGTCTCCTGTTGCCCCTCGTATGCCAATGTACCCTCCCGGTGCTCCAGGTCTTGGACAACAATTTTTGTATGGACAAGCTCCTACAGCCATCATTCCTCCACAAGCGGGGTTTGGTTACCAGCAACAACTAGTTCCTGGGATGAGGGCCGGTGGTGCTCCAATGCCAAACTTCTTTGTCCCCTTGGTTCAGCAGGGCCAACAAGGCCAGCGCCCTGTTGGACGCCGAGGAGCAGGTCCAGTGCAACAACCCCAGCAGCCAGTGCAACTGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTACCGTTACCCTCCTGGTCGCAACATGCAAGATGTTCCAAGGCCAGGTGTGGCAGGAGGAATGCTTCCAGTCCCTTATGAAATGGCCGGTGTGCCAATTCGGGACGCTGTGGCTCAGCCAATGCCCATTCAGGCCTTAGCAACTGCTCTTGCAAATGCTCCTCCTGAGCAGCAGAGGACTATGCTGGGCGAAGCTTTGTACCCGCTTGTAGATCAGCTGGAGCATGATGCTGCAGCCAAGGTCACAGGCATGCTTTTGGAGATGGACCAACCTGAGGTATTGCACCTGATTGAGTCACCAGACGCTCTCAAGGCAAAAGTATCTGAAGCCGTGGATGTGCTTAGAACTGTTTCCCAGCAGCAAGTTAACAGCCCTGCTGATGAACTAGCCTCACTCACTCTCAACGACAACCACAACTCTTAG 2183 0.4631 MAQIQVQHQSPPSAPNGLAPTPGANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARAIDVLNFTPLNSKPIRITYSHRDPSIRKSGTANIFIKNLDKGIDHKALHETFSAFGSILSCKIATDASGQSKGYGFVQFDNEESAQNAIDKLNGMLLNDKQVYVGHFLRKQERENVLSRTKFNNVYVKNLSESMTDEDLKKIFGEYGTITSAIVMRDADGKSKCFGFVNFENADDAGTAVEALNGKKLDDKEWYVGKAQKKSERELELKGKFEQSVKADVDKYQGLNLYLKNLDDSIDDEKLKELFSEFGTITSFKVMRDPNGISRGSGFVAFSTPEEASRALAEMTGKMIAGKPLYVAVAQRKEDRRARLQAQFSQMRPIAMSPVAPRMPMYPPGAPGLGQQFLYGQAPTAIIPPQAGFGYQQQLVPGMRAGGAPMPNFFVPLVQQGQQGQRPVGRRGAGPVQQPQQPVQLMQQQMLPRGRVYRYPPGRNMQDVPRPGVAGGMLPVPYEMAGVPIRDAVAQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVSEAVDVLRTVSQQQVNSPADELASLTLNDNHNS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02229 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bach3g02229 649 CDD RRM1_I_PABPs 31 110 IPR034364 -
Bach3g02229 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bach3g02229 649 SUPERFAMILY RNA-binding domain, RBD 208 292 IPR035979 GO:0003676
Bach3g02229 649 Gene3D - 297 402 IPR012677 -
Bach3g02229 649 Gene3D - 1 113 IPR012677 -
Bach3g02229 649 Gene3D - 200 296 IPR012677 -
Bach3g02229 649 Gene3D - 114 199 IPR012677 -
Bach3g02229 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Bach3g02229 649 FunFam Polyadenylate-binding protein 199 294 - -
Bach3g02229 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Bach3g02229 649 PANTHER RNA BINDING PROTEIN 29 92 - -
Bach3g02229 649 SUPERFAMILY RNA-binding domain, RBD 306 406 IPR035979 GO:0003676
Bach3g02229 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Bach3g02229 649 CDD RRM4_I_PABPs 311 389 - -
Bach3g02229 649 SMART rrm1_1 210 282 IPR000504 GO:0003723
Bach3g02229 649 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bach3g02229 649 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bach3g02229 649 SMART rrm1_1 313 385 IPR000504 GO:0003723
Bach3g02229 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bach3g02229 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Bach3g02229 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Bach3g02229 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bach3g02229 649 CDD RRM2_I_PABPs 116 192 IPR045305 -
Bach3g02229 649 FunFam Polyadenylate-binding protein 17 119 - -
Bach3g02229 649 MobiDBLite consensus disorder prediction 1 22 - -
Bach3g02229 649 SMART poly_2 563 626 IPR002004 GO:0003723
Bach3g02229 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 624 IPR006515 GO:0003723
Bach3g02229 649 Gene3D - 547 630 - -
Bach3g02229 649 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Bach3g02229 649 FunFam Polyadenylate-binding protein 547 629 - -
Bach3g02229 649 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Bach3g02229 649 FunFam Polyadenylate-binding protein 295 400 - -
Bach3g02229 649 CDD RRM3_I_PABPs 208 287 - -
Bach3g02229 649 FunFam Polyadenylate-binding protein 120 192 - -
Bach3g02229 649 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bach3g02229 649 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bach3g02229 649 SMART rrm2_1 31 104 IPR003954 GO:0003676
Bach3g02229 649 SMART rrm2_1 313 385 IPR003954 GO:0003676
Bach3g02229 649 SUPERFAMILY PABC (PABP) domain 493 632 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02229 Bach-Chr3 29214430 29218073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02229 1 644 Eukaryotic Initiation Factors Gene Family AT4G34110 65.798 0.0 845
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g02229 3 29214430 29218073 Bach3g02229 3 29214430 29218073 ECH