LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach3g02214	ATGATGGCTCACTATCATTATCAACAAGAGTCAGAGTCACAGGCAAAAGAGAACCCTAAATTTCTTCTGGATCCCCTCTACTGCTCGGAAGAGCATTGGGAGGAAGTAGGAGAAGATAATTACTACCAAGAATTAGAACAAGTAGATGAATGTTACAAATGTAGCAATAAAAGAAACTCTCCAGTTAGAGTGATGCTAGAACAAGACCGATATTGGGATGATGAAGAGCTAACATCTCTACTCAGCAAACAAGAGCAAAACCAACTTGATGCATGCCTCGGAACCAACCCATCCTTGGCTGCGGCTCGTACAGAAGCCGTGGGGTGGATGCTGAAAGTGAATTCCCACCACTCTTTCTCTGCTCTCACCGCACTTCTTGCCGTCAACTACTTGGACAGGTTCCTTTCCAGATTCCAATTTCAGAATGGGAAGCCATGGATGACCCAACTCACTGCCGTCGCGTGCCTTTCTCTAGCTGCCAAGGTGGAGGAGACCCAAGTCCCGCTTTTGCTAGACCTCCAAGTGGAGGACAGTAGATACGTGTTCGAAGCCAAAGCGATCAAAAGAATGGAGATTTTGGTCCTTTCCACTCTTGAATGGAAGATGAATCCCGTAACCCCGCTCTCATTTCTAGATTATATCACGAGAAGACTTCGCTTGAAGGATTATCTCTGCTGGGAGTTCCTCCGAAGATGTGACGCTATTCTTCTCTCACTCGTTGCAGGTGATACCAGATTTATGTGTTATCTTCCTTCTGAGATGGCAACTGCTACGATGATTCATGTTGTCAACAGTGTTGAACCTCGTCTGGGAGTTGAGTACCAAAATCAGCTTCTGGGTATCTTTGGAATTAACAAGGACAAAGTGGAGGAATGCTACAAGCTCATCTTGGAATTGGTATCACGGTATGAGTACGACTACCACGGCATCGGTAAACGATCCAACAAACGCAAGTTTGGGTCTGTCCCTGGTAGCCCAAGTGGCGTAATGGAAGTGTCATTCTCATTCAGCACTAGTGATAGCTCCAATGATTCTTGGTCGGTAGCGGCTTCTGCGTCGTCCTCACCGGAGCCTCAGTCCAAGAAGACTAGGGCTCAAGACCAGCTTCTACTAAACCATCCCAATTCAGATTTCCTCACCATTCCTCGCTAG	1152	0.4661	MMAHYHYQQESESQAKENPKFLLDPLYCSEEHWEEVGEDNYYQELEQVDECYKCSNKRNSPVRVMLEQDRYWDDEELTSLLSKQEQNQLDACLGTNPSLAAARTEAVGWMLKVNSHHSFSALTALLAVNYLDRFLSRFQFQNGKPWMTQLTAVACLSLAAKVEETQVPLLLDLQVEDSRYVFEAKAIKRMEILVLSTLEWKMNPVTPLSFLDYITRRLRLKDYLCWEFLRRCDAILLSLVAGDTRFMCYLPSEMATATMIHVVNSVEPRLGVEYQNQLLGIFGINKDKVEECYKLILELVSRYEYDYHGIGKRSNKRKFGSVPGSPSGVMEVSFSFSTSDSSNDSWSVAASASSSPEPQSKKTRAQDQLLLNHPNSDFLTIPR	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach3g02214	383	SMART	Cyclin_C_2	205	340	IPR004367	-
	Bach3g02214	383	MobiDBLite	consensus disorder prediction	335	383	-	-
	Bach3g02214	383	SUPERFAMILY	Cyclin-like	72	203	IPR036915	-
	Bach3g02214	383	CDD	CYCLIN_AtCycD-like_rpt1	102	200	-	-
	Bach3g02214	383	Pfam	Cyclin, C-terminal domain	205	321	IPR004367	-
	Bach3g02214	383	CDD	CYCLIN_AtCycD-like_rpt2	205	296	-	-
	Bach3g02214	383	MobiDBLite	consensus disorder prediction	335	375	-	-
	Bach3g02214	383	Gene3D	-	204	294	-	-
	Bach3g02214	383	FunFam	CYCLIN D32	204	294	-	-
	Bach3g02214	383	FunFam	D3-type cyclin	96	203	-	-
	Bach3g02214	383	SMART	cyclin_7	108	196	IPR013763	-
	Bach3g02214	383	Gene3D	-	98	203	-	-
	Bach3g02214	383	Pfam	Cyclin, N-terminal domain	92	203	IPR006671	-
	Bach3g02214	383	SUPERFAMILY	Cyclin-like	189	301	IPR036915	-
	Bach3g02214	383	ProSitePatterns	Cyclins signature.	103	134	IPR006671	-
	Bach3g02214	383	PANTHER	CYCLINS	44	305	IPR039361	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach3g02214	Bach-Chr3	29125297	29126760	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach3g02214	8	299	Core Cell Cycle Gene Families	AT4G34160	51.027	4.10e-97	292

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach3g02214	3	29125297	29126760	Bach12g00273	12	1832855	1834462	BWGD
	Bach3g02214	3	29125297	29126760	Bach4g00490	4	3288789	3290265	ECH
	Bach3g02214	3	29125297	29126760	Bach10g00429	10	3017735	3019257	ECH
	Bach3g02214	3	29125297	29126760	Bach11g00290	11	2003416	2004947	ECH
	Bach3g02214	3	29125297	29126760	Bach3g02214	3	29125297	29126760	ECH