Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g00533 ATGGGGAGAGGACGGGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTTACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCTTATGAACTCTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGTAGCACCTCTAACATGCTCAAAACAATTGAAAGGTACCAGAAATGCAGTTATGGTGCACTGGAAGTCAGCAAACCTGCAAAAGAGCTTGAGAGCAGCTACCGTGAGTATCTGAAGCTGAAAACAAGATTTGAATCCCTTCAAAGGACCCAGAGAAACCTTCTTGGGGAAGACTTGGGCCCTCTGAATACCAAGGAACTTGAGCAGCTTGAGAGGCAGCTGGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGACTCAATACATGTTGGACCAGCTTTCTGATCTTCAGAACAAGGTAAATGATTTTGACATGACTAATGGAAAAAACCAGCTTTGTTTTCTGGAAGAATTGAACTCAAGAACCCACTACAGGCAATCATGGGAAACTGGTGATCAAAGCATGCAATATGGACAACAGAATGCTCACTCTCAGGCCTTCTTCCAGCCTTTGGAATGCAATCCAACATTGCAGATAGGTCCTGAATACAGGTACAATCCTGTAGCTTCAGATCAGATGCCTGCAACAACTCAAACCCAACAAGTGAGTGGCTTCATTCCTGGGTGGATGCTTTGA 747 0.4471 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTIERYQKCSYGALEVSKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQYMLDQLSDLQNKVNDFDMTNGKNQLCFLEELNSRTHYRQSWETGDQSMQYGQQNAHSQAFFQPLECNPTLQIGPEYRYNPVASDQMPATTQTQQVSGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g00533 248 ProSiteProfiles K-box domain profile. 87 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach1g00533 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 Coils Coil 124 144 - -
Bach1g00533 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bach1g00533 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Bach1g00533 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bach1g00533 248 Pfam K-box region 85 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach1g00533 248 FunFam MADS-box transcription factor 1 13 87 - -
Bach1g00533 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach1g00533 248 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g00533 Bach-Chr1 7046009 7050967 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach1g00533 K-box 8.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach1g00533 1 7046009 7050967 Bach8g02529 8 31382574 31387537 BWGD