LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach12g00273	ATGAATACCCAGAAAAAGATGGCTCACCCTCATCATCATCATCAGCAACAGTCAGAGTCAGAGGCACAAGAGGACCCTAAATTCCTTCTGGATTCTCTCTACTGCTCAGAAGAGCATTGGGAGGAAGTAGGAGAAGACAGTTACATCCAAGAATTAGAACAAGTAGATGAATGTTACCAAAATAGCAATAAAAGAAACTCACCAGCGCTAGTGTTGCTAGAACAGGACCTGTATTGGGATGATGAAGAGGTAACGTGTCTGCTCAGCAAGCAAGAGCAAAACCAGCTTGATAAATATCTCGGAACCAACCCATACTTGGCTGCGGCTCGCAAGGAAGCCGTGGAGTGGATTCTGAAAGTGAATTCCTACTACACTTTCTCTGCTCTCACCGCTCTTCTTGCCGTCAACTACTTTGACAGATTCCTTTCCAGGTTCCAGTTTCAGAATGGGAAGCCGTGGATGACCCAACTTGCCGCTGTTGCGTGCCTTTCTCTGGCTGCCAAGGTGGAGGAGACGGAAGTGCCGCTTTTGCTAGACCTCCAAGTGGAGGACTGTAGATACGTGTTCGAAGCCAAAACGATTAAAAAAATGGAGATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAATCCCGTCACCCCACTCTCATTTCTCGATTATATCACAAGAAGACTTGGCTTAAAGGATAACCCATGCTTGGAGTTCCTCAGGAGGTGTGAGGCTATTCTTCTCTCTCTCATTTCAGATTCCAGATTTATGTGTTATCTTCCTTCTGTGGTTGCAACTGCTACAATGATTCATGTTGTCAACAGTGTGGAACCTCGTCTAGGAGTTGAATACCAAAATCAGCTTCTGGGTATCCTTGGAATAAACAAGGACAAAGTGGAGGAATGCTACAAGCTCATATTGGAATTAGTGTCAGGGTATGAGTACCGGTTCTACGGCCTCAGCAAAGAATCCAACAAACGTAAGTTTGGGTCTGTTCCTGGTAGCCCAAATGGCATAATGGATGTGTCATTCTCATTCAGCACCAGTGATAGCTCCAACGATTCTTGGTCAGCAGCTGCTTCTGTGTCTTCCTCACCAGAGCCTCTGTCCAAGAAGACTAGGGGTCAAGCCCAGCTTCTACTAAACCATCCCAATTCAGATTTCCTCACCATTCCTCGCTAGTTCTTCTTCAATTCTCCTCTTCTTTCCTTTATAGTCCTCTAAGCTTAATAATGCTTATCTTTCTTTCTTTTCTTCTCTTTTCACTTGGCAAGTTAAATTGCCAACCATCTCTGCGTACACTACTTGCCGACTTCGAT	1307	0.4491	MNTQKKMAHPHHHHQQQSESEAQEDPKFLLDSLYCSEEHWEEVGEDSYIQELEQVDECYQNSNKRNSPALVLLEQDLYWDDEEVTCLLSKQEQNQLDKYLGTNPYLAAARKEAVEWILKVNSYYTFSALTALLAVNYFDRFLSRFQFQNGKPWMTQLAAVACLSLAAKVEETEVPLLLDLQVEDCRYVFEAKTIKKMEILVLSTLGWKMNPVTPLSFLDYITRRLGLKDNPCLEFLRRCEAILLSLISDSRFMCYLPSVVATATMIHVVNSVEPRLGVEYQNQLLGILGINKDKVEECYKLILELVSGYEYRFYGLSKESNKRKFGSVPGSPNGIMDVSFSFSTSDSSNDSWSAAASVSSSPEPLSKKTRGQAQLLLNHPNSDFLTIPR	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach12g00273	389	CDD	CYCLIN_AtCycD-like_rpt1	109	207	-	-
	Bach12g00273	389	CDD	CYCLIN_AtCycD-like_rpt2	212	302	-	-
	Bach12g00273	389	PANTHER	CYCLINS	25	307	IPR039361	-
	Bach12g00273	389	FunFam	D3-type cyclin	103	210	-	-
	Bach12g00273	389	ProSitePatterns	Cyclins signature.	110	141	IPR006671	-
	Bach12g00273	389	Gene3D	-	105	210	-	-
	Bach12g00273	389	MobiDBLite	consensus disorder prediction	344	372	-	-
	Bach12g00273	389	Pfam	Cyclin, N-terminal domain	90	210	IPR006671	-
	Bach12g00273	389	SUPERFAMILY	Cyclin-like	79	210	IPR036915	-
	Bach12g00273	389	Gene3D	-	211	300	-	-
	Bach12g00273	389	SMART	cyclin_7	115	203	IPR013763	-
	Bach12g00273	389	SUPERFAMILY	Cyclin-like	194	329	IPR036915	-
	Bach12g00273	389	FunFam	CYCLIN D32	211	300	-	-
	Bach12g00273	389	Pfam	Cyclin, C-terminal domain	212	309	IPR004367	-
	Bach12g00273	389	SMART	Cyclin_C_2	212	346	IPR004367	-
	Bach12g00273	389	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach12g00273	Bach-Chr12	1832855	1834462	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach12g00273	15	305	Core Cell Cycle Gene Families	AT4G34160	52.234	1.03e-100	301

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach3g02214	3	29125297	29126760	Bach12g00273	12	1832855	1834462	BWGD
	Bach12g00273	12	1832855	1834462	Bach4g00490	4	3288789	3290265	ECH
	Bach12g00273	12	1832855	1834462	Bach10g00429	10	3017735	3019257	ECH
	Bach12g00273	12	1832855	1834462	Bach11g00290	11	2003416	2004947	ECH
	Bach12g00273	12	1832855	1834462	Bach12g00273	12	1832855	1834462	ECH