Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00222 ATGCAATCAAACAGCTCTGATTCCCAACAACAACAACAACAACAACAGTCCGAACTGAATCAACGGCAACAACAAACGCAAACAGAGACACAGACGCCACCGCAGCCACTACCACTGCCACAGCAGTGGATGCCGATGCAATTCCCGGCGGCGGCTATGGTAATGCAGCATCACATGTTACCACCTCAACATTACTTGCCGCCGCCACCGCAGCACTATATGCCTTATCACCAGTACCAGCACCTGCCACATTTATCTCATCCGCAGCAGCATCAGCATCAGGGATCAAGCGGTGAGAACAAGACAATCTGGGTCGGCGATTTACATCATTGGATGGACGAGAATTATCTCCATCGCTGCTTCGCTTCTACGGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGATATGGGTTTGTGGAATTTTATTCACATGCTACAGCTGAGAAAGTCTTACAGAATTATGCTGGCATTTTGATGCCCAATACAGAACAACCTTTCCGCCTGAACTGGGCAACATTTAGCACGGGTGATAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTAGGCGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCACAAGCCATGTCTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCACGAAAATCATCTGGCTATCAGCAACAAGGAGGTCATGTGTCAAATGGCATATCAAACCAATCTGAAGCAGATTCAACAAACACGACAATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTCAGGCAGTCTTTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCCGTTGGGAAAGGATGCGGCTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGAACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGTCGCAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAGCCCATGGAGCGGGGCATACTATGGAGGCCCTGTCTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGCATGTATGCTGCTGCATATGGGGCTTACCCTTTCTTTGGCGGCCACCAACAGCAAGTAAGCTGACTGAAAGTGCAGGAGTAGTAGCTCTCACAACAGTATCACGCTTGAATGGGCTAATTTAATTTGCCTCCATTGTAACTTGCATGATCTGTTGAACCCTTTAAGAATCCCTCCTCATTGTGGAGTGGAGTTGAA 1428 0.4559 MQSNSSDSQQQQQQQQSELNQRQQQTQTETQTPPQPLPLPQQWMPMQFPAAAMVMQHHMLPPQHYLPPPPQHYMPYHQYQHLPHLSHPQQHQHQGSSGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQGGHVSNGISNQSEADSTNTTIFVGGLDPNVTDEDLRQSFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWSGAYYGGPVYDGYGYALPPPHDPSMYAAAYGAYPFFGGHQQQVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00222 431 MobiDBLite consensus disorder prediction 1 42 - -
Bach12g00222 431 MobiDBLite consensus disorder prediction 274 295 - -
Bach12g00222 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Bach12g00222 431 SUPERFAMILY RNA-binding domain, RBD 69 183 IPR035979 GO:0003676
Bach12g00222 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 91 377 - -
Bach12g00222 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Bach12g00222 431 MobiDBLite consensus disorder prediction 1 32 - -
Bach12g00222 431 MobiDBLite consensus disorder prediction 272 295 - -
Bach12g00222 431 Gene3D - 182 287 IPR012677 -
Bach12g00222 431 FunFam Polyadenylate-binding protein RBP47 286 403 - -
Bach12g00222 431 Gene3D - 100 180 IPR012677 -
Bach12g00222 431 FunFam polyadenylate-binding protein RBP47 isoform X2 52 190 - -
Bach12g00222 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 373 IPR000504 GO:0003723
Bach12g00222 431 CDD RRM1_SECp43_like 102 182 - -
Bach12g00222 431 CDD RRM2_SECp43_like 193 272 - -
Bach12g00222 431 SUPERFAMILY RNA-binding domain, RBD 177 284 IPR035979 GO:0003676
Bach12g00222 431 SMART rrm1_1 302 369 IPR000504 GO:0003723
Bach12g00222 431 SMART rrm1_1 195 269 IPR000504 GO:0003723
Bach12g00222 431 SMART rrm1_1 102 177 IPR000504 GO:0003723
Bach12g00222 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 170 IPR000504 GO:0003723
Bach12g00222 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Bach12g00222 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 366 IPR000504 GO:0003723
Bach12g00222 431 SUPERFAMILY RNA-binding domain, RBD 288 401 IPR035979 GO:0003676
Bach12g00222 431 CDD RRM3_NGR1_NAM8_like 300 371 - -
Bach12g00222 431 Gene3D - 288 403 IPR012677 -
Bach12g00222 431 FunFam Polyadenylate-binding protein RBP47C isoform A 193 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00222 Bach-Chr12 1511855 1515482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00222 103 381 Eukaryotic Initiation Factors Gene Family AT4G34110 28.521 2.08e-30 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g02263 3 29459569 29467473 Bach12g00222 12 1511855 1515482 BWGD
Bach12g00222 12 1511855 1515482 Bach12g00222 12 1511855 1515482 ECH