Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01299 ATGGGTCTCCCTCAATTAGCACGATCATCAAAAAGATTCACCCACCCCCTTCTTCTCAATTTTCCAAATCCTCCGCTGGTTTCACTTTCGCTCTCTAGTTCTATCAGATCACTGTCCATTTCACCAATCTGTACGCAGAGTTCAGTTTTTTATCACTATTTTGAAACCAGCAAGCAAAATCCGTGTGGGTCTCCTAAAAATCACGCTTTCGGCTTTCACACATTGATTCATGGCGGCACAAAGCAAGGAGAAGCAGTTGTTGGAGCCAATGACTTGAACCCAGATGCTGCTAATGGTCTAGTTGCAGAAAGGATTTGCAGGACTTTATCAAACAGTCCTAATTCTAGTCTTGAGGCCTCTCTCGGTAATCTTTCGGTGAAGGTAACGCCTGAACTTGTGGTTGAGGTCTTGAAAAAGCTAAGCAATGCTGGTTTTCTCGCACTTACCTTCTTCCGATGGGCTGAGAAGCAAAAAGGGTTCAAACATAGTACAGAAAGTTACAATACCTTGATTGAGGCTCTGGGTAAGATCAAACAGTTCAAGATGATTTGGAATTTGGTGGGTGACATGAAGAGTAAGAAGTTGCTGAACAAAGATACTTTTGCATTAGTTGCACGGAGATATGCTAGAGCTAGGAAGGTTAAAGAAGCGGTGGAGACGTTTGAGAAGATGGAAGGGTTTGGGATGGAGACAGAATTATCAGATTTCAATAAATTGATGGATACCTTGAGTAAGTCAAAGTGTGTTGAGAAAGCACAAGAGCTGTTTGATAAAATGAAAAAGAGAAGGTTCCCCCCTGATGTTAAATCCTACACAATATTGTTAGAAGGGTGGGGCCAACAGCAGAATTTATTGAGACTTAATGAGATCTATAGGGAGATGAAGGATGACGGTTTTGAGCCAGATGTTATTACATATGGTATTATTATCAATGCACATTGTAAGGCTAGGAAATGTGATGAAGCTATTCGGTTCTATCATGAGATGGTAGCAAGGAATGTAAAGCCAACCCCAAACATATTTTGTATTTTGGTTAATGGACTGGGTTGTGAGAAAAGGTTACATGAAGCTCTTCAATTCTTTGAAATGTCCAAGGCTTGTGGTTTTGCCCTGGATGCCCCCACTTATAACGCTGTTGTGGGGGCGTATTGTTGGTCATTGCAAATGCATGACGCTTACAGGATGATAGAGGAGATGAAAAAATGTGGAGTAGGTCCAAATTCGCGAACTTTTGACATAATACTACATCACTTGATAAAGGCTGGAAGAACAGAAGAAGCTTACTCAGTTTTCCAGAGAATCAGTGGTGAGCTGGGGTGTGAACCAACATTAAGCACACATGAGATCATGTTGAGGATGTTTTGTAATTTAGATCGACTGGATATGGCAATGAGGGTTTGGGATCAGATGAAGGCCAAGGGTATCCTTCCTGGAATGCATATGTTTTTGACTTTAATTAATGCCTTGTGCCATGAGAGTAAGTTAGATGATGCTTGTAGATTCTTTCAAGAGATGTTAGATATGGGCATTCGACCTCCTGGGAAAATGTTTAGTAATTTGAAACAAGCTCTGCTTGATGAGGGGAGGGAAAGCACTGCCTTACTGTTGGCTCAGAAGATTGATAAACTGAGGAAAACTCCATTGATTGGTTGA 1653 0.4126 MGLPQLARSSKRFTHPLLLNFPNPPLVSLSLSSSIRSLSISPICTQSSVFYHYFETSKQNPCGSPKNHAFGFHTLIHGGTKQGEAVVGANDLNPDAANGLVAERICRTLSNSPNSSLEASLGNLSVKVTPELVVEVLKKLSNAGFLALTFFRWAEKQKGFKHSTESYNTLIEALGKIKQFKMIWNLVGDMKSKKLLNKDTFALVARRYARARKVKEAVETFEKMEGFGMETELSDFNKLMDTLSKSKCVEKAQELFDKMKKRRFPPDVKSYTILLEGWGQQQNLLRLNEIYREMKDDGFEPDVITYGIIINAHCKARKCDEAIRFYHEMVARNVKPTPNIFCILVNGLGCEKRLHEALQFFEMSKACGFALDAPTYNAVVGAYCWSLQMHDAYRMIEEMKKCGVGPNSRTFDIILHHLIKAGRTEEAYSVFQRISGELGCEPTLSTHEIMLRMFCNLDRLDMAMRVWDQMKAKGILPGMHMFLTLINALCHESKLDDACRFFQEMLDMGIRPPGKMFSNLKQALLDEGRESTALLLAQKIDKLRKTPLIG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Bach10g01299 550 Gene3D Tetratricopeptide repeat domain 437 547 IPR011990 GO:0005515
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 442 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 236 268 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 340 372 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 166 195 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 304 337 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 481 512 IPR002885 -
Bach10g01299 550 NCBIfam pentatricopeptide repeat 446 477 IPR002885 -
Bach10g01299 550 Gene3D Tetratricopeptide repeat domain 364 436 IPR011990 GO:0005515
Bach10g01299 550 Gene3D Tetratricopeptide repeat domain 231 363 IPR011990 GO:0005515
Bach10g01299 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 232 529 - -
Bach10g01299 550 Pfam PPR repeat 473 505 IPR002885 -
Bach10g01299 550 Pfam PPR repeat 206 228 IPR002885 -
Bach10g01299 550 Pfam PPR repeat 166 194 IPR002885 -
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Bach10g01299 550 Gene3D Tetratricopeptide repeat domain 106 230 IPR011990 GO:0005515
Bach10g01299 550 Pfam PPR repeat family 373 419 IPR002885 -
Bach10g01299 550 Pfam PPR repeat family 236 277 IPR002885 -
Bach10g01299 550 Pfam PPR repeat family 301 348 IPR002885 -
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Bach10g01299 550 SUPERFAMILY HCP-like 214 368 - -
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Bach10g01299 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01299 Bach-Chr10 10543466 10545118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01299 117 541 Glycosyltransferase AT1G05670 24.503 8.83e-28 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach10g01299 10 10543466 10545118 Bach10g01299 10 10543466 10545118 ECH