Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01261 ATGCACAATAACGAAGCTTCGTCTCCATCCCGCAATGGTGGACTTGGCGCGAACACCACCACCACCTCTCAAATGCAGCCAAACAGCTCCGTCTTTGCTGCACTGCACTCTGCATTGTTCTCCGACCAGCCATCGCTCCCTGCTGGCAGCGGTCTCTCGCTTCACCCGTTTGAAGGAAAACCGGATTTTAAGTACTCTGACTCAGCGACTCAGAGCCATTTCTGTGACTCTTGCGTGATTCAGAAGCATCAGGACATGGTGAACCGCCAAAGTATCTGTCAGAAGCATCAGGACATGGTGAACCGCCAAAGTATCTGCGTCAGTCAGCTTCTGGAAACTTCGAAATTAGAAATCGATGCTTTGCGACAAGAGAACACCCATCTTCGTGCTGTGAATCGCGAGCTGAACAATCAGTTGAATTTTGTGCTTCAGACCTCGGTTAACCAATTCGATAGTTCCTCTGTCCCTACTACAGCATTTGACATTGCAAATGGATTTCGTGGGATCCACATTGGGGACACCAGAGAAGGGAAAGAGAACTTTGCTGATTGGAAGGACCAGGAAGTGTCTGATGAGAGCCCAACTAGCGTGATCGAGAGCCCTGTTGAAGTGGGGAGGTTCTCGCTGCCAAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGATGGCTCAGACAGCTGGAAGTGCCGGCAGTGCGAGCCGCACCAAAAGCGCAACTCGGCCACGAACTTCCTCGAGTCCACTTGATGTCGTTCAAAAGGTATATGTGAGTGGGGGGAAGCAGGAGCAAGAGCCTCTTGAGATGGTAGTATACAACCAAGGAATGTTCAAAACAGAGCTGTGCAACAAATGGCAGGAGACTGGTACTTGCCCTTACGTTGACCACTGCCAATTTGCTCATGGAATTGACGAGCTACGCCCAGTGATTCGCCACCCACGCTACAAGACAGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTCTGCCCATATGGTCATAGATGTCATTTCCGCCACGCACTCACTGAAGAAGAAAAGGCCATAGCACAGCCTAAATCCAGGGCAATGAAGCTCGAAAGATAA 1083 0.5023 MHNNEASSPSRNGGLGANTTTTSQMQPNSSVFAALHSALFSDQPSLPAGSGLSLHPFEGKPDFKYSDSATQSHFCDSCVIQKHQDMVNRQSICQKHQDMVNRQSICVSQLLETSKLEIDALRQENTHLRAVNRELNNQLNFVLQTSVNQFDSSSVPTTAFDIANGFRGIHIGDTREGKENFADWKDQEVSDESPTSVIESPVEVGRFSLPKSISVRSNGYLKMAQTAGSAGSASRTKSATRPRTSSSPLDVVQKVYVSGGKQEQEPLEMVVYNQGMFKTELCNKWQETGTCPYVDHCQFAHGIDELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEEEKAIAQPKSRAMKLER 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01261 360 MobiDBLite consensus disorder prediction 226 247 - -
Bach10g01261 360 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Bach10g01261 360 FunFam Zinc finger protein 36, C3H1 type-like 1 310 346 - -
Bach10g01261 360 SUPERFAMILY CCCH zinc finger 311 341 IPR036855 GO:0046872
Bach10g01261 360 FunFam zinc finger CCCH domain-containing protein 15-like 270 309 - -
Bach10g01261 360 Coils Coil 111 138 - -
Bach10g01261 360 MobiDBLite consensus disorder prediction 1 24 - -
Bach10g01261 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Bach10g01261 360 PANTHER CCCH ZINC FINGER/TIS11-RELATED 96 349 IPR045877 GO:0003729
Bach10g01261 360 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Bach10g01261 360 Gene3D - 310 346 - -
Bach10g01261 360 Gene3D - 271 309 - -
Bach10g01261 360 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Bach10g01261 360 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Bach10g01261 360 SUPERFAMILY CCCH zinc finger 273 308 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01261 Bach-Chr10 9912863 9915134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01261 90 358 C3H Transcription Factor Family AT1G68200 53.261 7.51e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bach10g01261 zf-CCCH 4.8e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach10g01261 10 9912863 9915134 Bach10g01261 10 9912863 9915134 ECH