Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g01212 GCATCCTCTCGTCTTTTGGGTATAAACCCTTTGCGGATCGGTGGAGCAAAGCTGTGCCTGTGAATTTCCGAAGCTGTAAGGACGGCGATCGAGTTGTGGTAGAAGATGAAGGTTTTCGTGAAGACTCTTAAAGGCACCCACTTCGAAATTGAAGTGAAGCCTGACGACACGGTTGCTGATGTGAAAAAAAATATAGAAACTGTTCAAGGTGCAGATGTCTATCCTTCTACACAACAAATGCTTATCCATCAAGGGAAAGTTCTGAAAGATAGCACTACCTTGGAGGAAAATAAAGTGGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAAAGCTCGTCTGGAGAGGGTTCTACTACAAGTGCAGCTAAGGCCCCACAGACTAGTGCTGCTCCTACTCCAGCCCCAGCTTCAACGTCACCTCCAGCACCTGCTGTGACTGCAGCACCGCCTGCACCTATACCTGCTCCTGCTCCAGCCCCTGCTCCGGAAGCTGCTCCTGCCCCTGCTCCAGAAGCTTCTCCTGCCCCGGCTCCAGAGGCTGCCCCTGCCCCTGCCCCTGCCCCTGCTCCAGAAGCTGCTCCTGCGTCAGTCTCTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGAACCAACTTGGAGGATACAGTTCAGCAAATTCTTGATGTGGGTGGAGGAAGTTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCTTACAACAACCCAGAGAGAGCTGTTGAATATTTGTATAGTGGTATCCCGGAGCAAGCTGAAGTACCTCCTGTTGCTCGAGTCCCAGCTAGTGCACAGACTACTGATCCTCCAGCTCCAGCTCCAGCTCCAGCTCCACAAGGGGCACAGCCAGCTCCTGTTCCTTCAAGTGGACCAAATGCTAATCCTTTAGACCTCTTTCCCCAGGGTCTTCCCAATGTTGGCTCTGGTGCTGCTGGGGCAGGCAGTCTTGATTTTCTGCGCAATAGTCAACAGTTCCAAGCCTTGCGATCTATGGTGCAGGCTAATCCACAAATTTTGCAGCCTATGCTTCAAGAACTTGGGAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAACTGACTTCCTTCGCCTGATAAATGAACCAGTGGAAGGGGGCGAGGGGAATATATTGAATCAGCTGGCTGCTGCTATGCCTCAAGCAGTAACTGTCACCCCTGAGGAGCGTCAAGCTATAGAACGCCTTGAAGCAATGGGCTTTGATCGTGCACTTGTATTGGAAGTGTACTTTGCTTGCAACAAAAACGAGGAATTGGCTGCCAACTACCTCTTAGATCACATGCACGAGTTTGAGGAATGA 1359 0.4982 MKVFVKTLKGTHFEIEVKPDDTVADVKKNIETVQGADVYPSTQQMLIHQGKVLKDSTTLEENKVAENSFIVIMLSKSKSSSGEGSTTSAAKAPQTSAAPTPAPASTSPPAPAVTAAPPAPIPAPAPAPAPEAAPAPAPEASPAPAPEAAPAPAPAPAPEAAPASVSDIYGQAASNLVAGTNLEDTVQQILDVGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARVPASAQTTDPPAPAPAPAPQGAQPAPVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRSMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNILNQLAAAMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g01212 417 Gene3D - 365 412 - -
Bach10g01212 417 MobiDBLite consensus disorder prediction 77 162 - -
Bach10g01212 417 SUPERFAMILY UBA-like 355 415 IPR009060 GO:0005515
Bach10g01212 417 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bach10g01212 417 SMART CBM 290 333 IPR006636 -
Bach10g01212 417 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 406 - -
Bach10g01212 417 MobiDBLite consensus disorder prediction 243 266 - -
Bach10g01212 417 FunFam UV excision repair protein RAD23 homolog 175 225 - -
Bach10g01212 417 Pfam XPC-binding domain 292 347 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bach10g01212 417 SUPERFAMILY XPC-binding domain 289 354 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach10g01212 417 CDD Ubl_Rad23 1 74 - -
Bach10g01212 417 MobiDBLite consensus disorder prediction 77 101 - -
Bach10g01212 417 FunFam UV excision repair protein RAD23 B 283 348 - -
Bach10g01212 417 FunFam UV excision repair protein RAD23 1 80 - -
Bach10g01212 417 SMART ubq_7 1 75 IPR000626 GO:0005515
Bach10g01212 417 MobiDBLite consensus disorder prediction 102 159 - -
Bach10g01212 417 Gene3D - 1 80 - -
Bach10g01212 417 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Bach10g01212 417 SUPERFAMILY UBA-like 180 233 IPR009060 GO:0005515
Bach10g01212 417 PRINTS DNA repair protein Rad23 signature 384 398 IPR004806 GO:0006289
Bach10g01212 417 PRINTS DNA repair protein Rad23 signature 399 414 IPR004806 GO:0006289
Bach10g01212 417 PRINTS DNA repair protein Rad23 signature 367 383 IPR004806 GO:0006289
Bach10g01212 417 PRINTS DNA repair protein Rad23 signature 318 340 IPR004806 GO:0006289
Bach10g01212 417 SMART uba_6 182 222 IPR015940 -
Bach10g01212 417 SMART uba_6 373 410 IPR015940 -
Bach10g01212 417 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bach10g01212 417 NCBIfam UV excision repair protein Rad23 1 416 IPR004806 GO:0006289
Bach10g01212 417 Gene3D - 283 348 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach10g01212 417 FunFam UV excision repair protein RAD23 homolog 364 412 - -
Bach10g01212 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 411 IPR015940 -
Bach10g01212 417 Gene3D - 175 225 - -
Bach10g01212 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 180 223 IPR015940 -
Bach10g01212 417 MobiDBLite consensus disorder prediction 237 274 - -
Bach10g01212 417 CDD UBA1_Rad23_plant 176 225 - -
Bach10g01212 417 Pfam UBA/TS-N domain 182 220 IPR015940 -
Bach10g01212 417 Pfam UBA/TS-N domain 373 408 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g01212 Bach-Chr10 9250587 9256142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach10g01212 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.40e-08 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach10g01212 10 9250587 9256142 Bach10g01212 10 9250587 9256142 ECH