Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04406 ATGGAAGCAGTTACTACTTCAACTGAGGAAACCGCCACAACCAGCGACTCACTTTCCATAACCCTATCCCCGGCTAAATCTCCTCCTCCGCCGCCGACAGCCAATAACAATACTGCCGACGGATGCGGCGTCGCCGCCGAGGTTGAATCCCGGAAGCTACCGTCGTCCAAGTACAAAGGCGTGGTGCCTCAGCCCAACGGCCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGTACCTTCAACGAGGAGGACGAAGCCGCCAGGGCCTACGACATCGCGGCGGTCAGATTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCACCTCACCGTAGCCGACGGTGACTCCGACGAATCCGACGACGGCTCAGAAACCGAGTTTCTGAATTCGCATTCCAAGTCCGAGATCGTGGACATGCTGAGGAAGCACACCTACGAGGAAGAGCTTCGTCAGAGCAAGCGAGGTGGCGCGTGCGGCGGAAAGAGGCACCGACGAGGCAACGGCGACAACTTCGACGCGTCCTCCTTCGGCTCTGAGGGCGCGTGCAATCTTCGCGCGCGTGAACAGCTGTTCGAGAAAACGGTTACGCCTAGCGATGTTGGTAAACTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCAATACAGGGAAACGGTTGCGCAGCAGCGGCGAAAGGAGTGCTGTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTCACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAGCCTCCGGGCTGGTGATGCGGTTCGGTTTTACCGGTCGGCTGGACCAGACGGACAGCTGTACATTGACTGCAAAGCAAGAATGGATTGTGGTGGTGTTGTAAATAGCCCTAATGAAGATGATAATACGAAGAATAATAAAAGAAATAATGGTTTGTTGATTCCGGTTGGACCGGTGGTTGAGCCGGTTCAGATGGTACGGCTTTTCGGGGTCAACCTTTTGAAGCTTCCTGGTTCGGATGGGGTTGGTGGTGGATGCAATGGGAAGCGGAAAGAGATGGAGCTGTTTGCATTAGAATGTAGCAAGAAGCCAAAGATTATTGGAGCTTTGTAA 1155 0.5472 MEAVTTSTEETATTSDSLSITLSPAKSPPPPPTANNNTADGCGVAAEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAVRFRGKDAVTNFKHLTVADGDSDESDDGSETEFLNSHSKSEIVDMLRKHTYEEELRQSKRGGACGGKRHRRGNGDNFDASSFGSEGACNLRAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPIQGNGCAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDAVRFYRSAGPDGQLYIDCKARMDCGGVVNSPNEDDNTKNNKRNNGLLIPVGPVVEPVQMVRLFGVNLLKLPGSDGVGGGCNGKRKEMELFALECSKKPKIIGAL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04406 384 SMART rav1_2 57 118 IPR001471 GO:0003700|GO:0006355
Arst9g04406 384 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Arst9g04406 384 SUPERFAMILY DNA-binding pseudobarrel domain 195 300 IPR015300 -
Arst9g04406 384 FunFam AP2 domain-containing protein RAP2.8 56 113 - -
Arst9g04406 384 Pfam B3 DNA binding domain 196 296 IPR003340 GO:0003677
Arst9g04406 384 Gene3D AP2/ERF domain 56 113 IPR036955 GO:0003700|GO:0006355
Arst9g04406 384 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Arst9g04406 384 ProSiteProfiles B3 DNA-binding domain profile. 196 302 IPR003340 GO:0003677
Arst9g04406 384 CDD B3_DNA 195 296 IPR003340 GO:0003677
Arst9g04406 384 Gene3D - 186 306 IPR015300 -
Arst9g04406 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 358 IPR044800 GO:0003700
Arst9g04406 384 MobiDBLite consensus disorder prediction 1 43 - -
Arst9g04406 384 MobiDBLite consensus disorder prediction 153 177 - -
Arst9g04406 384 SMART B3_2 196 301 IPR003340 GO:0003677
Arst9g04406 384 MobiDBLite consensus disorder prediction 1 23 - -
Arst9g04406 384 ProSiteProfiles AP2/ERF domain profile. 57 112 IPR001471 GO:0003700|GO:0006355
Arst9g04406 384 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04406 Arst-Chr9 119406916 119408689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04406 5 383 RAV Transcription Factor Family AT1G13260 53.316 6.05e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Arst9g04406 B3 3.3e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g04406 9 119406916 119408689 Arst9g04406 9 119406916 119408689 ECH