Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04399 ATGAAACAGGAGATAAATCATAATCAGCATCAAGGGGAGTGTTCTTATTCTTCATCTTCTTACAATATGATGCATCAACACAACATGATGATGATGAGTGATGAGATGATCTTTGGAGGAGGAAGAGGCTTCATCAATAGCAACAATATGAACATGATGAACATGAATATGAACATGTTGTCTTCTTCTGATCAAATGATGCATCAGCAGCAGCAGCAGCAGCAGCAACCATGGTCCATGCCATCAATACAAGAACTACCCTTCAACAACCATGAATCGTTTATTGTGCCTCCACAACAACAACAACAACAAGCTTCACCATATGCAAGCTTCTTCAACAGTAGAAGGGTTCATCCATCATCGTCATCTTCCATGCAGTTTGCAGCAGCATATCATCATCATGAGGGTGCTACTTCATCATTTGATCTGCAAGCTGAACTGAGCAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCTGCTTCCAAAAGCCACAGTGAAGCTGAGAGGAGGCGTAGAGAGAGGATCAATAATCATCTTTCTAAGCTCAGAAGCTTGTTGCCTAGCACCACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTGAAGGAACTGAAACGGCAAACATCAATGATCGCAGAGACGAGTTCAGTTCCAACAGAATCCGACGAGCTCACTGTGGACGATGCATCTGATGAAGATGGCAAATTGGTAATTAAAGCCTCTTTGTGCTGCGAAGATAGGTCCGATCTCTTGCCTGAACTCATCAAAACCTTGAAATCAATGAAGCTTCGAACCCTCAAAGCAGATATCACTACACTCGGTGGCCGTGTCAAGAACGTCTTGTTCATCACCGCTGAACAAGATTACTACTCATCATCCACCGGCAATGAGGATCATCATCATCAACATGACCATAATAATAGTTACCAATACTGCATTAGTTCAATACAGGAAGCTTTGAAGGCAGTTATGGAGAAAAGTAATGGCGGTGTTGGGAATGAGCCTGGTTCTTCTTCTGCAAGTGTCAAGAGACAAAGGACTAATATCATATCCTCCATATCTTAG 1086 0.4245 MKQEINHNQHQGECSYSSSSYNMMHQHNMMMMSDEMIFGGGRGFINSNNMNMMNMNMNMLSSSDQMMHQQQQQQQQPWSMPSIQELPFNNHESFIVPPQQQQQQASPYASFFNSRRVHPSSSSSMQFAAAYHHHEGATSSFDLQAELSKMTAQEIMEAKALAASKSHSEAERRRRERINNHLSKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSMIAETSSVPTESDELTVDDASDEDGKLVIKASLCCEDRSDLLPELIKTLKSMKLRTLKADITTLGGRVKNVLFITAEQDYYSSSTGNEDHHHQHDHNNSYQYCISSIQEALKAVMEKSNGGVGNEPGSSSASVKRQRTNIISSIS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04399 361 Gene3D - 156 221 IPR036638 GO:0046983
Arst9g04399 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Arst9g04399 361 MobiDBLite consensus disorder prediction 338 361 - -
Arst9g04399 361 PANTHER TRANSCRIPTION FACTOR BHLH30 54 355 IPR045847 GO:0003700|GO:0006355
Arst9g04399 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 220 IPR036638 GO:0046983
Arst9g04399 361 MobiDBLite consensus disorder prediction 333 361 - -
Arst9g04399 361 FunFam transcription factor bHLH30 157 220 - -
Arst9g04399 361 CDD bHLH_AtAIG1_like 157 234 - -
Arst9g04399 361 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Arst9g04399 361 SMART finulus 168 217 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04399 Arst-Chr9 119275656 119278337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04399 108 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 60.294 3.44e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst9g04399 HLH 1.9e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g04399 9 119275656 119278337 Arst9g04399 9 119275656 119278337 ECH