Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03608 ATGCATAACAAGGAAGCTTGCTCTCCCTCCTCCAATGGCGGATTTGGCGCCAACACCGCTACTGGCGGTGGTCAAATCCAGTCCAATGGCGGCGCATTGGCTTCGTTCTACTCTGCTCTCTTGAACGACAATCCGTCGCTCTCGGCGAATAGCAGCAGCTCGCTTTACCCGTACTCTGAGTCGGGAACTCAGATCAACTCGTACGACTCTTGCGTCATACAGAAGCACCAGGACATGGTGAATCGTCACAGCATGTGCCTTAATCGCCTCGTGGAGACTTCCAAGGAGGTAGAATCTCTGCGGCAAGAGAACGCGCATCTCCGTGCGGTGAACAAGGAGCTCCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCGCTGGAGAACCAATTCGGTGGCGGCTCCTCCTGCCAGGGTCAAACGACGCCGTTCGACGTGGTGCATGGATTCCGCGGGTTTCAGATTGGGGAAGGAAAAGAGAATTGCGGTGATTGGAATAGTAACAACACCAACAATAATAGCAATAACAATAAGGAGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAACAACGGCGTTGAGGTTGAGAGGTTCTCTCTCCCAAAGAGCATATCTGTGAGGTCCAATGGTTACCTGAAGATGGCTCAGTCTGCTGCTGCGGCTACTGCCACCAACACCACTACCTGTCGCACTAAGCCTACGACTCGCCCACGCGTCTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAGATGGTGGTTTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAATGGCAGGAAACAGGGACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGCATAGGGGAGCTTCGCCCAGTGATCCGCCACCCCCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGTCCATATGGCCATAGATGCCATTTCCGCCACGCACTCACTGAACAAGAGAAAGCTATATCACATCCTAAGCCCAGAACAATCAAGCTCGAAAGATAG 1074 0.5261 MHNKEACSPSSNGGFGANTATGGGQIQSNGGALASFYSALLNDNPSLSANSSSSLYPYSESGTQINSYDSCVIQKHQDMVNRHSMCLNRLVETSKEVESLRQENAHLRAVNKELQKQLNFVIQASLENQFGGGSSCQGQTTPFDVVHGFRGFQIGEGKENCGDWNSNNTNNNSNNNKEQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAAATATNTTTCRTKPTTRPRVSSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISHPKPRTIKLER 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03608 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Arst9g03608 357 MobiDBLite consensus disorder prediction 226 245 - -
Arst9g03608 357 FunFam Zinc finger protein 36, C3H1 type-like 1 307 343 - -
Arst9g03608 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Arst9g03608 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
Arst9g03608 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Arst9g03608 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Arst9g03608 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Arst9g03608 357 Coils Coil 90 117 - -
Arst9g03608 357 MobiDBLite consensus disorder prediction 226 244 - -
Arst9g03608 357 FunFam zinc finger CCCH domain-containing protein 15-like 267 306 - -
Arst9g03608 357 MobiDBLite consensus disorder prediction 160 187 - -
Arst9g03608 357 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872
Arst9g03608 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 76 346 IPR045877 GO:0003729
Arst9g03608 357 Gene3D - 268 306 - -
Arst9g03608 357 Gene3D - 307 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03608 Arst-Chr9 112385175 112388262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03608 72 346 C3H Transcription Factor Family AT1G68200 51.786 3.06e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst9g03608 zf-CCCH 2.9e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03608 9 112385175 112388262 Arst9g03608 9 112385175 112388262 ECH