Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03403 ATGTCTAAGAAAAAATCCAGCTTAGGTCGCCAAAAGATCCCTATTGAGAAAATTCCAAAAAAGAGTCACTTGCAAGTTACATTCTCTAAGAGGCGGTCAGGGCTATTCAAGAAAGCAAGTGAACTTTGCACCCTTTGTGGGGTCGAGATAACGATCGTGGTTTTCTCTCCGGCGGATAAGGCCTTTTCCTTTGGCCATCCGGAGGTAGAATCTATCATCGATCGTTATCTCGTCCTGAACCCTCCTCACGAGTCTATATCGAGTACTCAACAACTGGTTGAGGCGCATAGAAACGCCAATGTCCGGGATCTCAATATGCAACTTACACAACTGCTTAACCATTTGGAGATGGAGAAGAAGCGTGGGGAGGAGCTTGATCATGTGAGGAAAGTGAGGCAGAGGCAGTTTTGGTGGGAAAGCTCTACTGATGATCTTGGTTTTCATGAATTGATCCAACTAAAGGCCTCAATTGAGGAGCTCAAGAAGAACTTGGCAAAACATGTTAGCAAAATCATCATGATGGACCAAACCAACATGGATTCACGAATTATTGGGGTTAATAGTAATAATGGATTACTTAATCGTTATGATCATGCATTTGATAACAACAAATCTGATGCTGCTGCCTTCAATGTTGCTCCTACACTGCCTCCTCCTAATAACAATGCCTATTACATGGGTTTTCGTCATGGTTATCTTTGA 702 0.4274 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSFGHPEVESIIDRYLVLNPPHESISSTQQLVEAHRNANVRDLNMQLTQLLNHLEMEKKRGEELDHVRKVRQRQFWWESSTDDLGFHELIQLKASIEELKKNLAKHVSKIIMMDQTNMDSRIIGVNSNNGLLNRYDHAFDNNKSDAAAFNVAPTLPPPNNNAYYMGFRHGYL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03403 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Arst9g03403 233 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Arst9g03403 233 Coils Coil 98 125 - -
Arst9g03403 233 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Arst9g03403 233 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Arst9g03403 233 Gene3D - 87 187 - -
Arst9g03403 233 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Arst9g03403 233 PANTHER MADS BOX PROTEIN 10 167 - -
Arst9g03403 233 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Arst9g03403 233 Coils Coil 150 170 - -
Arst9g03403 233 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Arst9g03403 233 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Arst9g03403 233 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Arst9g03403 233 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03403 Arst-Chr9 111200878 111201579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03403 5 233 Type I MADS-box Gene Family AT5G60440 44.758 6.73e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst9g03403 SRF-TF 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03403 - - gmx:100793705 305.449