Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03965 ATGAAGATGGTAGATAACAAGGACCCTGCAATTACTCTCTTTGGGAAGAAGATTCCCTTTCCCGGTGAAGCTGCTCTCAATGCCGCGGAATTAGAGGATGATGAGGTGGACAAACAAGTAGGACACAAGGATGGTGGAGCTGATGAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTTCTCGAAATGGAAATGCAGAGATCAATAAAAGAAAGGATTGGAGTGTTCAGAACCCAAAAACACCATCCATAGAGGAAGAAAGTGCAAAAATAAAGAAGGAGCAAAGCGATGCAGAGCAAGAGAAGGCAGTGAAGAAGCCGGATAAAGTGCTTCCATGTCCGCGCTGCAAAAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTCAACCAGCCGCGCTACTTCTGCAAGGCGTGCCAAAGATACTGGACTGCAGGCGGCGCCATGAGGAACGTGCCAGTTGGGGCAGGCAGGAGAAAGAACAAGAACAGCGCCAGCGCCTCCCACTATCGCCACATCACCATCTCTGATGGGACCTTGAAATCCAGTGGCAGAGTCCTCAGCTTTGGATTGGATACACCACCACCACCCATATGTGATTCCATGGCGTCTGTCCTCAACGGTTTTCATGGAATTGAGGATCAAAGTGGAGAAAATGGCGATGACTGCTCGAGTGGATCTTCCATTACCATGGAGGAAACAGGAAAAACCGCATCCCAAGAGCCTTTAGCACAAAGCCCTCCCCAAGTCCCATGCATTCCTAGTGTTCCTTGGCCTTATCCCTGGAATTCTGCTCTGTGTCCTCCTGGATTTCCCATTTCATTCTACCCGGCTCCTTTTTGGAATTGGAATGTTCCGTGGTTCCCCTCACATCCATCTACTCTAGGGAAGCACTCCAGGGATGATGCTGATGATGACACGGTCAAGCAAGACTATAGGCAAAAGGAAGAACCTCCAAGGCAGAGAAATGGGTGTGTTTTGGTTCCCAAAACTTTAAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAATGTGTCATTGGGGGTGGAATGTTTAAGGCTTTCCAATCAAACAAGGAAGAGAAGAATAAAGTGGTTGAAACCTCGCCAGTGTTGCTGGCTAACCCTGCAGCCTTGTCTAGATCCCTTCATTTTCATGAGAACTCATGA 1203 0.4746 MKMVDNKDPAITLFGKKIPFPGEAALNAAELEDDEVDKQVGHKDGGADEVTEKKKEADPSRNGNAEINKRKDWSVQNPKTPSIEEESAKIKKEQSDAEQEKAVKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGAMRNVPVGAGRRKNKNSASASHYRHITISDGTLKSSGRVLSFGLDTPPPPICDSMASVLNGFHGIEDQSGENGDDCSSGSSITMEETGKTASQEPLAQSPPQVPCIPSVPWPYPWNSALCPPGFPISFYPAPFWNWNVPWFPSHPSTLGKHSRDDADDDTVKQDYRQKEEPPRQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNECVIGGGMFKAFQSNKEEKNKVVETSPVLLANPAALSRSLHFHENS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03965 400 MobiDBLite consensus disorder prediction 212 249 - -
Arst8g03965 400 MobiDBLite consensus disorder prediction 296 321 - -
Arst8g03965 400 Pfam Dof domain, zinc finger 107 164 IPR003851 GO:0003677|GO:0006355
Arst8g03965 400 MobiDBLite consensus disorder prediction 69 83 - -
Arst8g03965 400 MobiDBLite consensus disorder prediction 295 322 - -
Arst8g03965 400 MobiDBLite consensus disorder prediction 32 106 - -
Arst8g03965 400 PANTHER CYCLIC DOF FACTOR 2 6 400 IPR045174 GO:0003700|GO:0006355
Arst8g03965 400 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Arst8g03965 400 Coils Coil 83 103 - -
Arst8g03965 400 MobiDBLite consensus disorder prediction 84 106 - -
Arst8g03965 400 MobiDBLite consensus disorder prediction 219 247 - -
Arst8g03965 400 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
Arst8g03965 400 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03965 Arst-Chr8 49832776 49835067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03965 3 398 C2C2-Dof Transcription Factor Family AT3G47500 46.781 1.25e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Arst8g03965 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03965 - - aip:107629495 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04227 1 104621688 104624914 Arst8g03965 8 49832776 49835067 ECH
Arst3g05156 3 126919911 126923412 Arst8g03965 8 49832776 49835067 ECH
Arst8g03965 8 49832776 49835067 Arst8g03965 8 49832776 49835067 ECH