Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00445 ATGGCTCTTCTGCTAGACAACTGCGAGAGCATTCTACTGTCGCTAGAGTCAAACAAGTCGGTGCCGGCGCCGTTTCTGACAAAGACGTACCAGCTGGTGGACGATCCAGCCACCGATCACATAGTGTCATGGGGAGAAGACCAAAGCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGAGATCTTCTTCCTAATTACTTCAAACACAATAACTTCTCAAGTTTCGTTCGCCAGCTCAATACTTATGGTTTCAGAAAGATTGTTCCGGATAGGTGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGTGAGATCCATAGAAGAAAAACCGCACACCACCCTCAACAGATAACCGCCATCAACCACCACCACTCTCCGATTCCTTCTTTCTTTCCATTCTCAAGCAGGCTCAGCATCTCGCCGCCAAACGACTCCGATGACCAAGCCAATTGGTGTGACTCTCCGCCGCCCACCGCCACACCCTGCTACAACACCTCATCCGTCACGGCGCTGTCGGAGGACAATGAGAGGCTGAGGCGGAGCAATACCATGCTCATGTCGGAGCTTGCACACATGAAGAAGCTCTACAATGACATAATCTACTTCGTTCAGAACCATGTGAAGCCAGTTCCTCCAAGCAACACTTGTTCTTCTTCTTTACTTCTTTGCAATAACACGCCATCATCACATTCATATGCTTCTTCCGGTGCCGCTAATGGTAACGTTTCAATGCTGCAAAGGCCGATGAACCATCTTCTCGGCTATTATTCTCAAACTCAAAACTGTCCAAGCAACACGGCAAGGAGCTCCGTCACGATTGTGGAAGCGCCACCACCCTGTAAGACCAAGCTTTTTGGAGTGCCGCTTCAGTCCAAGAAAAGGGTGCACCCTGAGTATGGGTCTAACAACCTCGCTAATTCAGAGACTAACAAGGCGCGTTTGATTTTGGAGAAGGATGACCTTGGCTTGAATCTCATGCCTCCTTCTACTACTTGTTAA 1017 0.4897 MALLLDNCESILLSLESNKSVPAPFLTKTYQLVDDPATDHIVSWGEDQSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAHHPQQITAINHHHSPIPSFFPFSSRLSISPPNDSDDQANWCDSPPPTATPCYNTSSVTALSEDNERLRRSNTMLMSELAHMKKLYNDIIYFVQNHVKPVPPSNTCSSSLLLCNNTPSSHSYASSGAANGNVSMLQRPMNHLLGYYSQTQNCPSNTARSSVTIVEAPPPCKTKLFGVPLQSKKRVHPEYGSNNLANSETNKARLILEKDDLGLNLMPPSTTC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00445 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 245 IPR027725 -
Arst8g00445 338 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g00445 338 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Arst8g00445 338 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g00445 338 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g00445 338 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g00445 338 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g00445 338 FunFam Heat stress transcription factor B-4 17 115 - -
Arst8g00445 338 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst8g00445 338 Gene3D - 17 116 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00445 Arst-Chr8 6453455 6455329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00445 1 336 HSF AT1G46264 54.960 9.20e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst8g00445 HSF_DNA-bind 2.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00445 8 6453455 6455329 Arst8g00445 8 6453455 6455329 ECH
Arst6g04111 6 109219442 109220752 Arst8g00445 8 6453455 6455329 PCT