Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00411 ATGCAATCCAACGGCTCTGATTCGCAGCAACAGCAACCAACGGACCAGAATCAACGCCAACAGCAGACGCCACCGCACCCGCAGCCACTGCCACTCCCACAGCAGTGGGTGCCGATGCAGTATCCCGCCACCGCCATGGTAATGCAGCACCCCATGCTGCCGCCTCAACATTACGCGCCGCCGCCACCCCAGCCCTACATGCCCTACCACCAGTACCAGCAGCAGGTGCCGCACGTTACCCCCCACCACGCACATCAGCACCAGCCTCAAGGATCCACCGCCGAGAACAAGACGATCTGGGTCGGAGATTTGCATCATTGGATGGACGAGAATTATCTCCACCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGGCACAGCTGAAAAAGTTTTACAGAACTATGCTGGAATTTTGATGCCAAACACAGAGCAACCTTTCCGGCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGACAATGTTCCAGACCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCCTCTTGCATGAGACTTTCTCCAGTAGATACCCTTCTGTTAAGGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGCTCCAAGGGATATGGTTTTGTCAGGTTTGGTGATGATAATGAGAGGTCTCAAGCTATGACTGAAATGAATGGTGTGTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGCTTATCAACAAGGAGGTCAATCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTAATAACACAACTATATTTGTTGGAGGACTGGACCCTAATGTTACAGCTGAAGATCTTAAGCATCCATTCTCCCAGTATGGCGAGATTGTCTCTGTTAAGATACCTGTTGGAAAAGGTTGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCCTTGCAGAAGCTAAATGGGACAATGATTGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGTTTAGAATGGAGTTTGGGAATCCATGGAGTGGGGCATATTATGGGGGCCCTGTTTATGATGGTTATGGATATGCATTGCCACCTCCACATGACCCAAGCATTTATGCTGCTGCTTATGGTGCATATCCCGTTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1278 0.4851 MQSNGSDSQQQQPTDQNQRQQQTPPHPQPLPLPQQWVPMQYPATAMVMQHPMLPPQHYAPPPPQPYMPYHQYQQQVPHVTPHHAHQHQPQGSTAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSAYQQGGQSNGTSSQSEADSNNTTIFVGGLDPNVTAEDLKHPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRMEFGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00411 425 FunFam Polyadenylate-binding protein RBP47 280 397 - -
Arst8g00411 425 Gene3D - 96 176 IPR012677 -
Arst8g00411 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Arst8g00411 425 Gene3D - 177 283 IPR012677 -
Arst8g00411 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Arst8g00411 425 FunFam Polyadenylate-binding protein RBP47C isoform A 96 176 - -
Arst8g00411 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Arst8g00411 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Arst8g00411 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Arst8g00411 425 SUPERFAMILY RNA-binding domain, RBD 189 368 IPR035979 GO:0003676
Arst8g00411 425 FunFam Polyadenylate-binding protein RBP47C isoform A 189 265 - -
Arst8g00411 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Arst8g00411 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Arst8g00411 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Arst8g00411 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Arst8g00411 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Arst8g00411 425 CDD RRM2_SECp43_like 189 268 - -
Arst8g00411 425 SUPERFAMILY RNA-binding domain, RBD 58 179 IPR035979 GO:0003676
Arst8g00411 425 CDD RRM1_SECp43_like 98 178 - -
Arst8g00411 425 MobiDBLite consensus disorder prediction 267 298 - -
Arst8g00411 425 MobiDBLite consensus disorder prediction 1 23 - -
Arst8g00411 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 87 371 - -
Arst8g00411 425 MobiDBLite consensus disorder prediction 270 298 - -
Arst8g00411 425 MobiDBLite consensus disorder prediction 1 35 - -
Arst8g00411 425 Gene3D - 284 397 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00411 Arst-Chr8 6002233 6006707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00411 99 376 Eukaryotic Initiation Factors Gene Family AT4G34110 27.915 2.00e-30 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00411 8 6002233 6006707 Arst8g00411 8 6002233 6006707 ECH
Arst6g04153 6 109630800 109635285 Arst8g00411 8 6002233 6006707 PCT