Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00209 ATGGTTACCACCGCGGCTGATTCTTCCTCTAACCACCACTCTCCCATTGTTGCTGCCGCCACAACCACAAATGTTCCCACCAGTAACCTTAATTTCCCGCGAAAAAGCCTACCTTCTCCTTGGGCTCAAGTCGTTCGCGGCCCCGACGTTGAGCCACCCTCCGCCGCCGTCCACCAATTGCTGTCGCCATCGTCTTGCTCGTCCTCCTCTGCAACCGACCAACTGCTGCAATCCTCCGATCCCTCGCCGCCGTTTGAAAGTTCTAATTCCGATGGCGCCACCGCGGCTGCAGCAAGTGTAGATAGCTTGGATGCTGATAAGGCGGGCAATAATGCGGGTGGACCTAAGAAACCCGCGTGGAGGAGGCAATCAAACGGCGTAGAAGATGCTTGTGCTGTGAAGGTAATGGACGCTGTTTCTTGGCCCGCTTTGTCAGATTCCACCAAGCCTACCACTAAGTTGTCACCTGAGGCCTCATCTTCCAAGACTGCTTTTGATGGATCGCAACCTACTCCTCGGGGTCCGGTTGCTTCACACTCTCCTCGAAAGCAAGGAGTTGGCAATGCAAGACTTAATCCAACATCAGTTTATGGTGGGGCTGGTAGACAAAGACTAATAAAGTGTGGAGGCGGCAATGTCAATGGCAATGGCAATGGCAATGGTGCTGGCCCTGTTCAAGCAATGAGGAGCTTCTCTGCTCCTCCTCCTCCCCCACCACCACCCCCTTTTCCTGTAATTCAGATGCCTCCAACTAGCTTTCCTAATGGGGTAGCAGGGGTGGCAGCCCTTGTTCCAAGAGATCCTTACAGGAATAGTAGCTGGGGTGCAAGGTCTCCGGTTGGGAGTTTCGTGCCACCAATGATTGAACATAGGAGTCCATCTCGCAGGGGAACTTTTGGGCATCATCCACGTACTGGTGGTTCTTTTCATAATTATGGCATCCGGAGTGATCAGGATCGCCAAAATTATGCACATACCAGAGATCCTCAGTTACACCCGCCAAGGATGTTTCCAACACGAGCAATGGGCCCGCTTCCACCTAATACCCCTTCATTTGCAGGTCCTCAGCCTATACCACCGTTTGTAAACCATGCTGGCTTTCCTGAATATTGTTATTTTCCAACGTTACAATTTGAACCATTTGGGGGTATGCCATTCTTTACCCATGGACCTCCTTCTGCAATGTTCTATCCTGTTGCAGAAACTTCTCTTGTCAATGCAATAGTCAAGCAAATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGATGAGTTTCTACGTTCTAACATGGATGATCAGGGCTTTGTTCCAATTAGATTGGTTGCAAGCTTTCGTCGTGTTAAAAGTTTGACAAGCAATGTTGAGTTGATTATAGATTCATTGAGAATATCTACTATCATAGAAGTGAAGGGTGATAAGTTGAGAAGGCGGAAGGATTGGATGAAGTGGCTGCCCACTCCTTTGAATCGGGCAGATTTTGGTTCAACATCTATGGGTGGATCAAGTTATAATAACTCAGCAACTGATTTTGAAAAGATCACTTTGGATAAGACCACTGTGGATAGACTTAATTCCAATTCTATCACAACGAGTGATGGCAATGTGAATGAAGAGTCCTCTAGTTCGTATCAATTCCATAATCATGATGCTATGCTTAGCAGCAATTAA 1671 0.4752 MVTTAADSSSNHHSPIVAAATTTNVPTSNLNFPRKSLPSPWAQVVRGPDVEPPSAAVHQLLSPSSCSSSSATDQLLQSSDPSPPFESSNSDGATAAAASVDSLDADKAGNNAGGPKKPAWRRQSNGVEDACAVKVMDAVSWPALSDSTKPTTKLSPEASSSKTAFDGSQPTPRGPVASHSPRKQGVGNARLNPTSVYGGAGRQRLIKCGGGNVNGNGNGNGAGPVQAMRSFSAPPPPPPPPPFPVIQMPPTSFPNGVAGVAALVPRDPYRNSSWGARSPVGSFVPPMIEHRSPSRRGTFGHHPRTGGSFHNYGIRSDQDRQNYAHTRDPQLHPPRMFPTRAMGPLPPNTPSFAGPQPIPPFVNHAGFPEYCYFPTLQFEPFGGMPFFTHGPPSAMFYPVAETSLVNAIVKQIDYYFSDTNLVKDEFLRSNMDDQGFVPIRLVASFRRVKSLTSNVELIIDSLRISTIIEVKGDKLRRRKDWMKWLPTPLNRADFGSTSMGGSSYNNSATDFEKITLDKTTVDRLNSNSITTSDGNVNEESSSSYQFHNHDAMLSSN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00209 556 SMART la 402 480 IPR006630 -
Arst8g00209 556 FunFam la-related protein 1B isoform X2 394 484 - -
Arst8g00209 556 PANTHER LUPUS LA PROTEIN-RELATED 138 516 IPR045180 -
Arst8g00209 556 MobiDBLite consensus disorder prediction 526 556 - -
Arst8g00209 556 MobiDBLite consensus disorder prediction 142 198 - -
Arst8g00209 556 PRINTS Lupus La protein signature 466 479 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Arst8g00209 556 PRINTS Lupus La protein signature 411 428 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Arst8g00209 556 MobiDBLite consensus disorder prediction 1 36 - -
Arst8g00209 556 MobiDBLite consensus disorder prediction 58 96 - -
Arst8g00209 556 Pfam La domain 408 463 IPR006630 -
Arst8g00209 556 MobiDBLite consensus disorder prediction 293 315 - -
Arst8g00209 556 CDD LAM 406 479 - -
Arst8g00209 556 Gene3D - 396 485 IPR036388 -
Arst8g00209 556 MobiDBLite consensus disorder prediction 1 126 - -
Arst8g00209 556 MobiDBLite consensus disorder prediction 144 168 - -
Arst8g00209 556 SUPERFAMILY "Winged helix" DNA-binding domain 395 486 IPR036390 -
Arst8g00209 556 ProSiteProfiles La-type HTH domain profile. 398 487 IPR006630 -
Arst8g00209 556 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00209 Arst-Chr8 2734852 2737548 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00209 8 2734852 2737548 Arst8g00209 8 2734852 2737548 ECH
Arst6g01717 6 17722479 17726834 Arst8g00209 8 2734852 2737548 PCT