Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04217 ATGGGTTGGCTTAGCAAATTTTTCAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCGTATTATAACGGGGATGCGGATTCTTACTTGCCATCGACGTCTGGTGTAACAAATGATGTTTGGCCTGAGAATGAGAACGAAGATATAGATCGTGCCATTGCATTATCTCTGGCAGAGCAAAATCATAGAGGAAACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCGAAATATGGAAACGAGAACATGTATCAACCCCATCCGGCGGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGGATTTGTGCTGGCTGCCATACTGAGATTGGTTATGGACGATATCTAAATTGTTTGAATGCTTTCTGGCATCCTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGACGTCTGCAAGCATTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACACGATAACACTCCAAGATGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGACTGGATATATCGGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCCTTGACTCTGCAATCATGGATACAAGCGAATGCCAACCGCTTTATGTTGATATACAAAGATTTTATGAAAGCTTAGACATGAAATTGGAGCAGCAAATTCCACTTCTCTTGGTTGAAAGACAAGCCCTGAATGAAGCAAGAGAGGGGGAGAAGCATGGTCACTATCACATGCCAGAAACTCTTCGGCTTTGTTTGAACTTTAATCAGATCTCGAGACGACCGAGACTTGGGGCAGGAAATAGAGCGGTCGACATGAGAACACAATCATACAAATTGACCAGACGTTGCGATGTGACGGCAATTCTCATTTTATTCGGACTTCCAAGATTGCTTACTGGATCGATCCTAGCTCACGAGATGATGCATGCATGGCTGCGGCTTAAAGGCTACCGAACCCTAAGTCAAAACGTCGAAGAAGGTATATGTCAGGTTATGGCATACATGTGGTTGCATTCTGAACTCACTTCGGCGTCAGCCTCATCCTCATCTTCAACATCTAGAAAAGGGAAAAGACCCCCTTTTGAGATGAAGCTCGGCGAGTTCTTCAAGCACCAGATTGAATCCGACATCTCGCCAGTTTACGGAGACGGGTTTAGGGCAGGTCACCAAGCAGTGCAGAAGTATGGTCTTCAGAAGACCCTAAACCATATCTGGATGACTGGTACTTTTCCATTTTGA 1428 0.4426 MGWLSKFFKGSDQKISEGHYHSYYNGDADSYLPSTSGVTNDVWPENENEDIDRAIALSLAEQNHRGNHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMYQPHPAVPIPVPVYFPMGSRICAGCHTEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYVDIQRFYESLDMKLEQQIPLLLVERQALNEAREGEKHGHYHMPETLRLCLNFNQISRRPRLGAGNRAVDMRTQSYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQNVEEGICQVMAYMWLHSELTSASASSSSSTSRKGKRPPFEMKLGEFFKHQIESDISPVYGDGFRAGHQAVQKYGLQKTLNHIWMTGTFPF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04217 475 Coils Coil 69 89 - -
Arst6g04217 475 CDD LIM_DA1 125 177 - -
Arst6g04217 475 Pfam Ubiquitin interaction motif 77 90 IPR003903 -
Arst6g04217 475 Pfam Ubiquitin interaction motif 47 62 IPR003903 -
Arst6g04217 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Arst6g04217 475 Pfam Protein DA1 275 469 IPR022087 -
Arst6g04217 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 206 - -
Arst6g04217 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Arst6g04217 475 PANTHER PROTEIN DA1-RELATED 2 3 474 IPR045218 -
Arst6g04217 475 FunFam Protein DA1-related 1 119 178 - -
Arst6g04217 475 Gene3D Cysteine Rich Protein 119 183 - -
Arst6g04217 475 ProSiteProfiles LIM domain profile. 123 183 IPR001781 -
Arst6g04217 475 Pfam LIM domain 125 179 IPR001781 -
Arst6g04217 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 150 - -
Arst6g04217 475 SMART uim 77 96 IPR003903 -
Arst6g04217 475 SMART uim 46 65 IPR003903 -
Arst6g04217 475 SMART lim_4 124 176 IPR001781 -
Arst6g04217 475 ProSitePatterns LIM zinc-binding domain signature. 125 159 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04217 Arst-Chr6 110251330 110257525 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Arst6g04217 DA1-like 2.7e-86 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g04217 6 110251330 110257525 Arst6g04217 6 110251330 110257525 ECH