Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04120 ATGTCTCGTTGGTTATCAATGTTGTCTTTGGCACTGCTGTTGCCTCTGATTGTGTGGTCCAAAGCTAATGATAGTAAAGATCATGAAAGAGAAGGAAGAAGAAGCTGCATAGACTACAAGATTTTGAACATTGGAGCAATCATAGACTTCCATTCACTAATTGGAATGGAGCAGAAGATAGCTATGGAAGTTGCTATCAAAGATGTTAATAGCATATTGAGTTGTTCCAAGCTTGTTTTGAACTTCAATGATTCTCATCGGAATCCATCTAGTATGGTGGCAGCTGATCTTGCAAACAGCAAAAAGGTGCAAGCTATCATAGGAACAAAACTTGATGGAGCAACATTGGTCAATGAGATTCTTCAAAGCTCAAAGGAAATTCCCATCATATCCCTAACATCAAGTTCAGAAATAAGACAAATTCCATTGCCAAACTTCATACAAATAGGTAATGACATTACCTTAAACTTACAATGCATTGCAGCCATCATATGTGAATTCAATTGGAGAAAAGTGACAGCAATTTATGAACATGACAATGGATTCACCTCTTATGATTCAGATATATTAACAAAACTCTCATATTCTCTTAGCCATGTTAATTCTGAGATTGAAAACTATGTAGCTTTTCCTTCAGTGGACACCCTTTTAGACCCAAAAACAGCTATAGAACATGAACTTAAGAAGCTAAAGAACAAGAGCTATAACAGGGTTTTCTTGATTCTACAATCATCATTAGAGTTTGCAACTATTCTGTTCGAGAAAGCGAATCAGATGGGGTTGATGGAAAAAGGGTCAGTGTGGATCATCACAGATGACATAGCTAGCCATCTTGATTCACTGGATTATTCATCTGTTACCTTCAATATGCAAGGTGTTATTGGGTGCAAAACAAGCTTCGTCGAGTTGAGCCAGACATTCAAACGTTTCAAATTCGCGTTCCGCCGCGAATTTGGGTTGGAATATCCTGAAGAAGAAATAGAAAACCCCCATCCAAGTCTCTCTGCTCTTAGAGCTTATGATGCCATTTGGATCATTGCTCATGCTCTAAGAAAATCACAATCACAAGGAAACTTTTCCATGGAAGAGTTATCAAAGAATGTTGTAGCTACAAATCATGAGGGTCTAAGTGGTAAAATAATTTTCAAAGATGGAAAATTGTTGGAACCAGCAACATTTAAGATTGTCAATGTTATTGGAAGAAGTTACAATGAGTTAGCATATTGGTCACCAGAATCCGGTTTCTCAGAGAACCTTGTCAACCAAATTAGTCCTTCTTCTGCTTCTGCTTCGACCTCTGGTAGAGTACTTTTAAGTAATGCGAATTGGCCGGGTGGATCGAAATCAGTGCCAAAAGGTTGGGTTTATAATAATGAAGGAAGGAGGAGTGTGAAGATTGGTGTCCCTGCTGGGGATCCATGTCCTCAGTTTGTGAATGTGAGTTATGATCAGAGGCTGAATCAAACACATATCACTGGTTTCTCAATACATGTCTTTGAAGCAGTTGTGAAGCATTTACCTTATCAGCTTCCTTATGATTTGGTGCCATTTTATGGATCCTATGATGACATAGTTGTGCAAGTGAACAATAAGGTTTTTGATGCTGCTGTTGGTGATATTCAAGTAATTGACCAAAGATATGCATATGCTGAATTCTCTAATCCATATATTCCATCCGGTATTGCCATGGTATCAAAAGTAAAGCCAGATAGATCAAAAGAAACATGGATGTTCATGGAAGCTTTCACAAAAGACATGTGGTTGTTAATGGCAGCAATGCACATGTTTATATCATTTGTTATATGGTTGATTGAACGTGAACATAATTCAGAGCTTAAAGGGTTTGGAACCATGCTATGGTTTTCTGTCACCACATTATTCTTTGTACATAGAGAACCTGTGAAAAGCAACTTGGCCAGAGCAGTGCTAGCACCATGGTTGTTTGCAATTCTGATAGTGACAACATGTTTCACAGCAAGCCTCTCATCAATGATGACAGTGTCTCAACTTGAACCATCTGTGCCTGATATACAAACACTGCTAAGGACCAATGCAATAGTGGGTTGCAATAAGAACACATTCTTGGTTCATTACTTGGTTAATGAACTGAAATTCAAGCCTGAGAATGTTAAGGGCTTTGAATCAATTAGTGATTTTCCAAGGGCTTTTGAGAAAAAAGAAATTGTAGCAGCTTTTACTATTGCACCTCATGCTGAAGTCTTTCTTGCTACACATTGTAAGGGATATATCAAAGCAGGACCTACCTTAAAGCTTGGTGGATTAGGCTTTGCATTTCCCAAGGGTTCAGCCCTATCAATTGACATATCAAGAGCAACATTGAAAGCAATAGAAAGTGGAGAAGTACAAAAACTAGAAGAAGAAATGTTATCTAAAACCACTTGTGGATCTCCAAATAGCAACATTATTCAAAATGTTGAACTTGGTCCCCAACCATTCTTTGGCCTATTTGGAATTTGTGGAGGCATTGCTGTCTTTGGTTTTTTAGTCTCAATGGCTCCTCTAATTGGAAAGAAGGGAAAAGGATTTATCAACTATTTAGAAGGGACATCATCATTGTTACAAAGAGGATTAGGCATAATAAAATCTTGTGTTTCAAAGAATCTAAGCAAGTACATAGCTAGTGCTCCAATCCAAGATGAAAATAAGAACTTAGAGGATGTCTCAAATAAAATGGAGCAAAATGTAGTGAATATTGAGTTGCCAATAACAACACACCACCACTTATAA 2748 0.377 MSRWLSMLSLALLLPLIVWSKANDSKDHEREGRRSCIDYKILNIGAIIDFHSLIGMEQKIAMEVAIKDVNSILSCSKLVLNFNDSHRNPSSMVAADLANSKKVQAIIGTKLDGATLVNEILQSSKEIPIISLTSSSEIRQIPLPNFIQIGNDITLNLQCIAAIICEFNWRKVTAIYEHDNGFTSYDSDILTKLSYSLSHVNSEIENYVAFPSVDTLLDPKTAIEHELKKLKNKSYNRVFLILQSSLEFATILFEKANQMGLMEKGSVWIITDDIASHLDSLDYSSVTFNMQGVIGCKTSFVELSQTFKRFKFAFRREFGLEYPEEEIENPHPSLSALRAYDAIWIIAHALRKSQSQGNFSMEELSKNVVATNHEGLSGKIIFKDGKLLEPATFKIVNVIGRSYNELAYWSPESGFSENLVNQISPSSASASTSGRVLLSNANWPGGSKSVPKGWVYNNEGRRSVKIGVPAGDPCPQFVNVSYDQRLNQTHITGFSIHVFEAVVKHLPYQLPYDLVPFYGSYDDIVVQVNNKVFDAAVGDIQVIDQRYAYAEFSNPYIPSGIAMVSKVKPDRSKETWMFMEAFTKDMWLLMAAMHMFISFVIWLIEREHNSELKGFGTMLWFSVTTLFFVHREPVKSNLARAVLAPWLFAILIVTTCFTASLSSMMTVSQLEPSVPDIQTLLRTNAIVGCNKNTFLVHYLVNELKFKPENVKGFESISDFPRAFEKKEIVAAFTIAPHAEVFLATHCKGYIKAGPTLKLGGLGFAFPKGSALSIDISRATLKAIESGEVQKLEEEMLSKTTCGSPNSNIIQNVELGPQPFFGLFGICGGIAVFGFLVSMAPLIGKKGKGFINYLEGTSSLLQRGLGIIKSCVSKNLSKYIASAPIQDENKNLEDVSNKMEQNVVNIELPITTHHHL 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04120 915 Pfam Bacterial extracellular solute-binding proteins, family 3 488 794 IPR001638 -
Arst6g04120 915 SUPERFAMILY Periplasmic binding protein-like II 443 793 - -
Arst6g04120 915 CDD GluR_Plant 465 796 - -
Arst6g04120 915 FunFam Glutamate receptor 156 328 - -
Arst6g04120 915 Pfam Ligand-gated ion channel 795 827 IPR001320 GO:0015276|GO:0016020
Arst6g04120 915 Gene3D - 463 575 - -
Arst6g04120 915 SMART GluR_14 463 798 IPR001320 GO:0015276|GO:0016020
Arst6g04120 915 Gene3D - 38 152 - -
Arst6g04120 915 Gene3D - 153 320 - -
Arst6g04120 915 FunFam Glutamate receptor 575 708 - -
Arst6g04120 915 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 842 IPR015683 -
Arst6g04120 915 Pfam Receptor family ligand binding region 59 399 IPR001828 -
Arst6g04120 915 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Arst6g04120 915 Gene3D - 576 708 - -
Arst6g04120 915 PIRSF IGluLR_plant 3 904 IPR017103 -
Arst6g04120 915 SUPERFAMILY Periplasmic binding protein-like I 42 454 IPR028082 -
Arst6g04120 915 Gene3D - 336 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04120 Arst-Chr6 109284559 109289963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04120 40 895 Ion Channels AT3G51480 29.879 1.66e-111 362