Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04111 ATGGGAATCGTTTTGGACAGCAACTGCGAATCCATAGTGGTGTCTTTGGAGACACAGAAGGCGGTGCCGGCGCCGTTCCTCACCAAGACCTACGAGCTGGTGGACGACGCCGCCACCGATCACATTGTCTCGTGGGGAGAAGACGAAACCACCTTCGTTGTCTGGCGTCCTCCTGACTTCGCCCGCGACCTTCTTCCCAACTACTTCAAACATAATAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTACCTGATAGATGGGAATTTGCAAATGACTTCTTCAAGAAAGGGGAGAAGCATTTGTTGTGTGAGATTCATAGAAGAAAAACATCACACACTCATCCTCATCATCAACAACTACCATCATCCATCAACCATAACCAAAATCATTTTAACAACAATATTCATCTTCTTCCCTCTGCTACTACATTTTATCATCCTTTTCACCAACACAACAACCGAGTCAGCATCTCCCCTGACTCGGACGAGTTACCTACTTGGTGTGACTCGGACATTATTAGCAACACTACTACTACTACCACTACTACTGCTTCTTCATCAACGCTTACAGCACTCTCTCAAGACAACGAAAGATTAAGGAGAAGCAACAACATCTTAATGTCCGAACTAGCACACATGAAGAAGCTCTATAACGACATAATCTATTTCGTTCAGAATCATGTTAAGCCTGTCGCACCAAGCAACACTTACTCTTCTAGTTTCATTCTTCCACAACACCAACCTTCTTCTTCTTCAGCTACAACAACTAATTGCAACGCTTTCTCAATGTTGCATAAGCAAGTGCAACAACAACAACAACACCACCATGACTATTTGAATTCTCCAACAAACACATCGAGGAGTTCTATAACAATGATTGAAGACCAAAGTAGTAAGAGTTGCAAGACGAAGCTATTTGGGGTGTCTCTTCAATCCAATAAGAAAAGGGTGCACCCTGACTATGGATTTAGCCACGCTTTTGCGGAAACAAATAACAAGGCTCGTTTGGTGTTGGGAAATGATAATGATGATTATTTGGGATTGAATCTCATGCCTCCTTCTTAG 1086 0.4309 MGIVLDSNCESIVVSLETQKAVPAPFLTKTYELVDDAATDHIVSWGEDETTFVVWRPPDFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDFFKKGEKHLLCEIHRRKTSHTHPHHQQLPSSINHNQNHFNNNIHLLPSATTFYHPFHQHNNRVSISPDSDELPTWCDSDIISNTTTTTTTTASSSTLTALSQDNERLRRSNNILMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYSSSFILPQHQPSSSSATTTNCNAFSMLHKQVQQQQQHHHDYLNSPTNTSRSSITMIEDQSSKSCKTKLFGVSLQSNKKRVHPDYGFSHAFAETNNKARLVLGNDNDDYLGLNLMPPS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04111 361 FunFam Heat stress transcription factor B-4 18 116 - -
Arst6g04111 361 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g04111 361 Coils Coil 196 216 - -
Arst6g04111 361 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g04111 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 283 IPR027725 -
Arst6g04111 361 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Arst6g04111 361 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g04111 361 Gene3D - 18 117 IPR036388 -
Arst6g04111 361 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g04111 361 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g04111 361 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g04111 361 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04111 Arst-Chr6 109219442 109220752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04111 10 358 HSF AT1G46264 55.956 1.06e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst6g04111 HSF_DNA-bind 2.7e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g04111 6 109219442 109220752 Arst6g04111 6 109219442 109220752 ECH
Arst6g04111 6 109219442 109220752 Arst8g00445 8 6453455 6455329 PCT