Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04094 ATGGCGCAGATTCAGGTGCAGCACCAGAGCGCGGTTTCGGCTCCACCGCAGAACGGCGTCGCAGCCGCTCCTTCGCCGCCACTGCCGGTGGGTGCTGCGAATGGGACGAACCAGTTTGTTACGACGTCGTTGTACGTCGGGGATCTAGACCCTGAGGTTGACGAGAGGCACCTCTACGATTTGTTCAACCAGGTCGGGCAAGTGGTCTCGGTTCGTGTCTGCAGTGATTTGACCACTCGCCGATCGCTCGGTTACGGTTACGTTAATTACAGTAACCCTCAGGATGCTGCACGAGCAATAGATGTACTGAATTTCACTCCACTGAACAACAAGCCCATTAGGATCATGTATTCTTATCGGGATCCTAGCATTCGCAAGAGTGGGACTGGAAACATTTTTATCAAGAATTTGGATAAAGCAATTGATCACAAAGCTTTACATGATACTTTTTCTTCTTTTGGACATATTCTTTCTTGCAAAATAGCGACTGATGCTTCTGGCCAGTCAAAAGGCTATGGTTTTGTTCAATTCGACACCGAGGAGTCTGCACAGAATGCAATCGATAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTACGTGGGTCATTTCTTACGTAAGCAAGATAGAGATAATGCTTTGGGTAAGACGACATTCAATAATGTGTATGTGAAAAACCTGTCTGAGTCGGTGACAGATGATGACTTGAAGAAAATTTTTGGAGAGTATGGGACGATCACTAGTGCTGTAGTAATGAGAGATGCATATGGTAGATCAAAGTGTTTTGGGTTTGTTAATTTTGAAAACCCAGAAGATGCTGCCAAAGCTGTTGAGTCACTCAATGGAAAGAAAATTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGAGAGAATGAGCTGAGAAGACGGTTTGAGCAAACTGTTAAAGAATCTGTTGATAAATACCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACCATCAATGATGAAAAGCTAAGAGAACTCTTCTCTGAGTTTGGTTCAATAACCTCTTGCAAGGTTATGCGCGATCCAAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTACGGAGATGAATGGTAAAATGATTGCTGGGAAGCCTCTGTACGTTGCCCTTGCTCAGAGAAAGGAAGAGAGAAGAGCTAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCGATGACACCTTCTGTTGCACCACGGATGCCACTTTATCCTCCTGGTGCTCCTGGTTTAGGGCAGCAATTTATGTACGGGCAAGGACCCCCAGCCATGATTCCCCCACAGGCTGGATTTGGCTACCAGCAGCAACTTGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATGCCTTTAGCTGAACTAAACAAGTTTTTCTAAAACAAGCTTGCTGTTTTATAAAACTTACTTTTCTCTATCAATTTGTTTCCTCAGTTGCTTCCAAGGGGACGCTATATGCGTTACCCTCCTGGGGGTCGCAATATGCAAGATGTTCCACTCCCAGGGGTTGCCGGAGGAATGTTGTCAGTCCCCTATGACATAGGTGGTCTTCCAATCCGCGATGGTGTAGGGCAGCCAGTTGGAATTCAGGCCTTGGCTACTGCTCTTGCAAATGCTCCTCCCGAACAGCAGAGGACTATGCTTGGTGAAGCTTTGTACCCGCTAGTGGACCAGCTGGAGCATGATGCAGCTGCTAAAGTTACAGGCATGCTATTGGAGATGGATCAGCCAGAGGTATTACACCTGATTGAATCACCAGATGCTCTCAAGGCAAAAGTTGCCGAGGCAATGGATGTGTTGAGAAATGTTTCTCAACAAGCCAACACCCCTGCCGATCAACTCGCCTCACTCTCCTTGAATGAGAATCTTGTCTCTTAG 1956 0.4627 MAQIQVQHQSAVSAPPQNGVAAAPSPPLPVGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSYRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDAYGRSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVAFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFMYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPLAELNKFFXNKLAVLXNLLFSINLFPQLLPRGRYMRYPPGGRNMQDVPLPGVAGGMLSVPYDIGGLPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANTPADQLASLSLNENLVS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04094 651 FunFam Polyadenylate-binding protein 550 632 - -
Arst6g04094 651 FunFam Polyadenylate-binding protein 131 204 - -
Arst6g04094 651 CDD RRM2_I_PABPs 128 204 IPR045305 -
Arst6g04094 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Arst6g04094 651 SUPERFAMILY RNA-binding domain, RBD 221 405 IPR035979 GO:0003676
Arst6g04094 651 SMART rrm1_1 325 397 IPR000504 GO:0003723
Arst6g04094 651 SMART rrm1_1 43 116 IPR000504 GO:0003723
Arst6g04094 651 SMART rrm1_1 222 294 IPR000504 GO:0003723
Arst6g04094 651 SMART rrm1_1 131 203 IPR000504 GO:0003723
Arst6g04094 651 MobiDBLite consensus disorder prediction 7 34 - -
Arst6g04094 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Arst6g04094 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 43 627 IPR006515 GO:0003723
Arst6g04094 651 FunFam Polyadenylate-binding protein 211 306 - -
Arst6g04094 651 Gene3D - 132 210 IPR012677 -
Arst6g04094 651 CDD RRM3_I_PABPs 220 299 - -
Arst6g04094 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 394 IPR000504 GO:0003723
Arst6g04094 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Arst6g04094 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Arst6g04094 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Arst6g04094 651 PANTHER RNA BINDING PROTEIN 41 104 - -
Arst6g04094 651 FunFam Polyadenylate-binding protein 307 412 - -
Arst6g04094 651 Gene3D - 551 633 - -
Arst6g04094 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Arst6g04094 651 CDD RRM1_I_PABPs 43 122 IPR034364 -
Arst6g04094 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Arst6g04094 651 SUPERFAMILY PABC (PABP) domain 501 643 IPR036053 GO:0003723
Arst6g04094 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Arst6g04094 651 FunFam Polyadenylate-binding protein 29 130 - -
Arst6g04094 651 SMART poly_2 566 629 IPR002004 GO:0003723
Arst6g04094 651 SMART rrm2_1 43 116 IPR003954 GO:0003676
Arst6g04094 651 SMART rrm2_1 222 294 IPR003954 GO:0003676
Arst6g04094 651 SMART rrm2_1 131 203 IPR003954 GO:0003676
Arst6g04094 651 SMART rrm2_1 325 397 IPR003954 GO:0003676
Arst6g04094 651 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Arst6g04094 651 Gene3D - 211 310 IPR012677 -
Arst6g04094 651 Gene3D - 1 131 IPR012677 -
Arst6g04094 651 Gene3D - 311 414 IPR012677 -
Arst6g04094 651 CDD RRM4_I_PABPs 323 401 - -
Arst6g04094 651 SUPERFAMILY RNA-binding domain, RBD 42 211 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04094 Arst-Chr6 109107888 109112426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04094 1 646 Eukaryotic Initiation Factors Gene Family AT4G34110 64.885 0.0 846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g04094 6 109107888 109112426 Arst6g04094 6 109107888 109112426 ECH