Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04060 ATGGATCGAGTTAAGGGCCCGTGGAGCCCGGAGGAGGACGAGACGCTGAGGAGGCTGGTGGGAGCCCACGGGCCGAGAAACTGGACTATTATCAGCAAGTCCATTCCAGGACGATCCGGCAAGTCGTGCCGGTTGCGGTGGTGCAATCAGCTGTCACCGGAGGTGGAGCACCGCGCATTCACGCCGGAGGAGGACGATATCATCGTCAGAGCCCACGCTGAGTTCGGAAACAAGTGGGCCACGATAGCCCGGTTACTTAACGGAAGAACCGATAACGCCGTCAAGAATCACTGGAACTCTACGCTCAAAAGGAAATGCCGCTCTACTGCTTCTGACGCCGTCACCGTCGCCGTTTACCCCGACGCGCAGCCTCTTAAAAGATCCGCCAGTGTCGGCCCGTGCCACGTTACCACGCCTAGCAGCCCGTCGGGCTCTGAGCTCAGCGATCCCGGGCTTCCCTCTCTGTCAACCCCGGGTTCGGATCCAAGAACGTTGCTGAGCTTGTCGCTGCCGGGATCATCGGGATCAGGCGCAGGCTCAGATTCGATTAAAGATGGGCTTGGTTCTGGGCTTTGTCCTGATCCTGACCCGGCCCAAATGTTCAGTCCGGAGTTCTTGGCGATGATGCAAGAAATGGTGAGGAAAGAGGTTAGGAATTACATGTCGATGGTTGAAGAGAACGGGGTTCGCATGCAGCAGACGGAAGCGATTCGAAACGGTGTTATGAAACGAATGGGAATTAGAAACGGATTAGAGAGGTAA 762 0.5669 MDRVKGPWSPEEDETLRRLVGAHGPRNWTIISKSIPGRSGKSCRLRWCNQLSPEVEHRAFTPEEDDIIVRAHAEFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCRSTASDAVTVAVYPDAQPLKRSASVGPCHVTTPSSPSGSELSDPGLPSLSTPGSDPRTLLSLSLPGSSGSGAGSDSIKDGLGSGLCPDPDPAQMFSPEFLAMMQEMVRKEVRNYMSMVEENGVRMQQTEAIRNGVMKRMGIRNGLER 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04060 253 CDD SANT 7 49 IPR001005 -
Arst6g04060 253 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Arst6g04060 253 FunFam MYB transcription factor 5 56 - -
Arst6g04060 253 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Arst6g04060 253 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Arst6g04060 253 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Arst6g04060 253 CDD SANT 59 102 IPR001005 -
Arst6g04060 253 Gene3D - 4 56 - -
Arst6g04060 253 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Arst6g04060 253 MobiDBLite consensus disorder prediction 128 196 - -
Arst6g04060 253 SMART sant 56 104 IPR001005 -
Arst6g04060 253 SMART sant 4 53 IPR001005 -
Arst6g04060 253 Gene3D - 58 117 - -
Arst6g04060 253 PANTHER MYB PROTEIN-RELATED 5 143 - -
Arst6g04060 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Arst6g04060 253 MobiDBLite consensus disorder prediction 133 180 - -
Arst6g04060 253 FunFam Transcription factor MYB44 59 105 - -
Arst6g04060 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04060 Arst-Chr6 108766742 108767798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04060 1 229 MYB Transcription Factor Family AT4G37260 49.638 3.41e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst6g04060 Myb_DNA-binding 1.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g04060 6 108766742 108767798 Arst5g00813 5 7187651 7188964 ECH
Arst6g04060 6 108766742 108767798 Arst1g01402 1 15942005 15943552 ECH
Arst6g04060 6 108766742 108767798 Arst6g04060 6 108766742 108767798 ECH