Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03934 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTTTCGAAGAGGAGAACGGGGCTTCTCAAGAAAGCACACGAAATCTCTGTGCTTTGTGATGCTCAGGTTGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCTTCTGAATCCAGCATGGAAGACATTCTGGAACGATATGAGAGACAGGCTCATGCTGAATTTGCTAGCACAAACGATGAGCCACAGGNAAACTGGTCTTATGAATGCATCAAGCTCACCGCCAAAATTGAAGTATTAGAGAAGAACATTAGGAATTTTGTGGGAAATGATCTTGACCCTTTGAGTTTGAGAGAGCTTCAAAGTTTGGAGCAGCAGCTTGATGCATCTCTAAAGCGTATCCGAATAAGAAAGAACCAAGTCATGAATCAATCCATCTCGGAGCTGAACAAAAGGGCAAGGCAATTGCAGGAGCAAAACAGTTTGTTAGCAAAGAAGATGAAAGATAAAGAGAAGACAATGAGTGAAGGTCCACAAGTCTGCCTTGAAACTCTGGGAAAAAGTACACCTAACATCAACTTGTCTTCTCAAGATCACCTACCACCACAAAGACTAGTTCCTTGTCTAAATCTCAGTGGGACAATACTGGAAGAAACAGCTGAAGCTCAAGATGGTGCTGGTGGCAGCACTGTAATCCCACCATGGATGCTTCAACATTTGACAAGCTAA 738 0.4295 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSESSMEDILERYERQAHAEFASTNDEPQXNWSYECIKLTAKIEVLEKNIRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKNQVMNQSISELNKRARQLQEQNSLLAKKMKDKEKTMSEGPQVCLETLGKSTPNINLSSQDHLPPQRLVPCLNLSGTILEETAEAQDGAGGSTVIPPWMLQHLTS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03934 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst4g03934 245 Coils Coil 123 176 - -
Arst4g03934 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Arst4g03934 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst4g03934 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst4g03934 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst4g03934 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst4g03934 245 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Arst4g03934 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst4g03934 245 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst4g03934 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Arst4g03934 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst4g03934 245 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Arst4g03934 245 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03934 Arst-Chr4 118020546 118032935 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst4g03934 K-box 3.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03934 4 118020546 118032935 Arst4g03934 4 118020546 118032935 ECH
Arst3g06016 3 133630409 133633809 Arst4g03934 4 118020546 118032935 ECH