Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03932 ATGGGGAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTTTGTAGCAGCTCTAGCATGCTCAAAACACTCGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAACTTGAGAATAGCTATCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAATCTTCTAGGGGAAGATTTGGGCCCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGATCAATTAACTGATCTTCAAAATAAGGAGCAGATCTTGGTAGATGTCAACAGAACCTTGAGCATGAAGCTGGATGAAATCAATTCAAGGAATCAATATAGGCAGCAATCATGGGAAGCTGGTGATCAAAGTATGCATCAATATACTGCTCCACATAATGCTCACTCTTCTCAAGGCTTCTTCCAGCCTCTGGAATGCAACCCCACTTTGCAGATTGGTGACTATAGGTACAATGGGGTAGGGTCAGATCAGATAACTGCTACAACAACAACTCAAGCTCAACAAGTGAGTGGTTTCATCCCTGGATGGATGCTTTGA 759 0.4216 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDEINSRNQYRQQSWEAGDQSMHQYTAPHNAHSSQGFFQPLECNPTLQIGDYRYNGVGSDQITATTTTQAQQVSGFIPGWML 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03932 252 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst4g03932 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst4g03932 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst4g03932 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst4g03932 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Arst4g03932 252 FunFam MADS-box transcription factor 1 13 87 - -
Arst4g03932 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst4g03932 252 Coils Coil 124 144 - -
Arst4g03932 252 Coils Coil 84 107 - -
Arst4g03932 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst4g03932 252 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst4g03932 252 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst4g03932 252 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Arst4g03932 252 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Arst4g03932 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst4g03932 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03932 Arst-Chr4 118006867 118012184 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst4g03932 K-box 1.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03932 4 118006867 118012184 Arst4g03932 4 118006867 118012184 ECH
Arst4g03932 4 118006867 118012184 Arst1g04105 1 103007094 103013970 ECH
Arst4g03932 4 118006867 118012184 Arst10g02792 10 94056558 94065944 ECH
Arst10g03161 10 100074368 100081423 Arst4g03932 4 118006867 118012184 PCT