Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06016 ATGGGAAGGGGAAGGGTAGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAACGGGCTACTGAAGAAGGCGTATGAGCTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACACTAGAGAGGTACCAGAAATGTAACTATGGAGCACCGGAAACTAATGTGTCAACTAGGGAAGCCTTGGAATTAAGCAGTCAACAAGAATACTTGAAGCTGAAGGCACGTTATGAAGCCCTACAAAGGTCCCAGAGAAACCTGATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTGGAGTCACTGGAAAGGCAGCTAGATTCGTCGTTGAAGCTAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTATCGGAACTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGGCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCAATGCAGCTGAATCCTGGTGGTGTTGATGATATGGGATATGCCCGCCATCCACCTCAACCTCAGCCCGATCCTCTTTTCCAGCAATTGGATTGTGAGCCTACCTTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTGACGGCAGGCCCAAGCATGGGCAATTACATGGGAGGATGGCTACCATAG 729 0.4678 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKLIRSTRTQFMLDQLSELQRKEHLLSEANRALRQRLEGYQINPMQLNPGGVDDMGYARHPPQPQPDPLFQQLDCEPTLQIGYQPDPVSVVTAGPSMGNYMGGWLP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06016 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst3g06016 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst3g06016 242 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Arst3g06016 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 Coils Coil 152 172 - -
Arst3g06016 242 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Arst3g06016 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 FunFam MADS-box transcription factor 7 13 98 - -
Arst3g06016 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 Coils Coil 126 146 - -
Arst3g06016 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst3g06016 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Arst3g06016 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06016 Arst-Chr3 133630409 133633809 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst3g06016 K-box 2.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g06016 3 133630409 133633809 Arst3g06016 3 133630409 133633809 ECH
Arst3g06016 3 133630409 133633809 Arst4g03934 4 118020546 118032935 ECH