Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05837 ATGTTAGACAACACCATCAATACTGCTTCTTGTTCTTCCGATGCCCAAAACCTCCCTAACAAAAGAAAAAGAAGACCCGCTGGAACCCCTGATCCAGATGCAGAAGTGGTGTCTCTGTCTCCCAAGACGCTGCTGGAATCGGATCGTTACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAAATGCATAGGAGGAGGCACAAGGTGCCCTGGAAGCTTCTCAAGAGGCAAGGAGGAGGCGGTACAACCATCATGAAGAAGAAGGTGTTCGTGTGTCCGGAACCCAGCTGCTTGCACCATGACCCGTGCCACGCGCTGGGTGACCTGGTGGGGATCAAGAAACACTTCAGAAGAAAGCACAGCAACCACAAGCAGTGGGTCTGCCATAAGTGCTCCAAGGGTTACGCCGTTCAATCCGATTACAAAGCTCACATCAAAACCTGTGGCACCCGTGGCCATTCCTGTGACTGTGGCCGCGTCTTCTCCAGGGTGGAGAGTTTCATAGAACACCAGGATGCGTGCACTGTGAGGCAGCACCGACCACTGCAACCGGCATGCTCTTCAAGAACAGCTTCAAGCACAAGTCCATCCAGTGACGCTAATTTTACCGTCACTGCCCCACTGCAACCACTTCCACCACCACCGCCACCACTGCCATCACCTTCAGAGATTCACAGGAACAATAGTAATACTCACAACTTGGAACTTCAGCTCCTACCTACTTCAATAAACTCTCATCAAAACCACGAAACCCGCTTGAGACTCGCAATAGGTGGGGACAATGGGAGGAGTGTTGAAGAAGAAAGGAACAATAACAATAGTGTAATGATGGTGGGTGATTCTTCTTCCACATTGGAAGTGGCAAGGTTGAAGGAGTGTGCAGGACAGGAGCTGAAGTTGGCAATGGCGGAAAAGGCCTATGCAGAAGAGGCAAGGAGAGAAGCGAAACGGCAGATTGAGATAGCTGAGCTTGAGTTTGAGAATGCAAAGAGGATAAGGAAGCAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAGCAAGCCATCAAGAAGATGACTTCAACTCTCATGGAGATAACATGCCATGCTTGCAAGCAAAACTTTCACTCTTCCAACAATGGCGTTGGGGTTCCGTCTGAAGAGACCTCCATTGTAATGAGTTACATGTCATCAGCAAACAACACTGATGATGGTGAAGCAGAATAG 1227 0.4971 MLDNTINTASCSSDAQNLPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRQGGGGTTIMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPLQPACSSRTASSTSPSSDANFTVTAPLQPLPPPPPPLPSPSEIHRNNSNTHNLELQLLPTSINSHQNHETRLRLAIGGDNGRSVEEERNNNNSVMMVGDSSSTLEVARLKECAGQELKLAMAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKMTSTLMEITCHACKQNFHSSNNGVGVPSEETSIVMSYMSSANNTDDGEAE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05837 408 MobiDBLite consensus disorder prediction 1 37 - -
Arst3g05837 408 Coils Coil 303 358 - -
Arst3g05837 408 MobiDBLite consensus disorder prediction 1 17 - -
Arst3g05837 408 SUPERFAMILY beta-beta-alpha zinc fingers 47 73 IPR036236 -
Arst3g05837 408 MobiDBLite consensus disorder prediction 184 226 - -
Arst3g05837 408 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 372 IPR031140 -
Arst3g05837 408 MobiDBLite consensus disorder prediction 186 210 - -
Arst3g05837 408 Gene3D Classic Zinc Finger 40 127 - -
Arst3g05837 408 MobiDBLite consensus disorder prediction 212 226 - -
Arst3g05837 408 Pfam Zinc finger, C2H2 type 50 72 IPR013087 -
Arst3g05837 408 Pfam Zinc finger, C2H2 type 132 152 IPR013087 -
Arst3g05837 408 SMART c2h2final6 131 158 IPR013087 -
Arst3g05837 408 SMART c2h2final6 50 72 IPR013087 -
Arst3g05837 408 SMART c2h2final6 95 125 IPR013087 -
Arst3g05837 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
Arst3g05837 408 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05837 Arst-Chr3 131915238 131917189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05837 21 408 C2H2 Transcription Factor Family AT2G01940 58.537 4.38e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g05837 zf-C2H2 0.0038 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05837 3 131915238 131917189 Arst3g05837 3 131915238 131917189 ECH