Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05156 ATGTCGGAAGTTAAGGACCCGGCGATAAAGCTTTTTGGGAGGACGATTCAGCTGCCACTGATCCCCAATGACCCTTCTCCACCACCACCACCACCTCCTCCTCCTCCATCTTCTTCTTCTCCACCAACTGAAGTTGAAGTGAGTTCTGTATCACAACCAGAAACAGAGGAACCATCAAAGAGAGAACTAACCTCAACACAAGATAAAGAAACCACAGAGGATTTGAAATCTCCCACAACAACATCTTCTGGCATATTTGAGAACCCAAAGACTCCCACAAATGGTGGAGAACAGAGTGAGACCAGTGTTTCTCAAGAAAAAACTCCCAAGAAACCGGACAAGATACTTCCGTGTCCGCGATGCAACAGCATGGACACCAAATTCTGCTACTACAACAATTACAACGTCAATCAGCCGCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCAGTAGGCGCTGGTCGCCGAAAGAACAAAAACTCTGCTGCATCGCATTATCGCCAGATAATGGTCCCGGAGGCGCTTCAAGCAGCTCACCTCAATGCCCCCAGTGGACTACACAATGCTGTCTTGACCTTTGGCCCAGATTCTCCTCTTTGTGATTCCATGTCCTCTGTATTGAACATTGCGGGAAAAGCCACAAATGGTGTTGTAAACGGGTTTCATGCACCGGAGGCAGCAACCACTTTTGTTTCCTATGGTAGGGATGATGATGGGAATGATCACTCAGTTGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAGGCCATGCCAGCTCTCATGAATCGGCTGATAAAAGAGTCGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCATGGAATTCGCCAATGCCTCCTCCTCCCACATTTTGCCCTCCAGGCTATCCTATGTCGATATACACCACCCCTTCATACTGGCAATGGAATGTGCCATGCATCTCACCCCAATCTCCGGCCCCTGGTTCCGGCCCAAATTCGCCGTTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCCAATTCGCAAAAGGAAAAGCCCAACACAGAAAGCAATAATGTGTTGATCCCCAAGACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGCCAACTCTCTCAATGGAGGAGGCCTCTTCAAGGCGTTCCCTTCCAAGGGTAACGACAAGAGTCACGTGGTCGAGGCGTCACCGATGCTGCACGCCAACCCTGCCGCCCTGACGCGGTCTCTCACCTTCCACGAGCGGACCTAG 1356 0.4926 MSEVKDPAIKLFGRTIQLPLIPNDPSPPPPPPPPPPSSSSPPTEVEVSSVSQPETEEPSKRELTSTQDKETTEDLKSPTTTSSGIFENPKTPTNGGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHLNAPSGLHNAVLTFGPDSPLCDSMSSVLNIAGKATNGVVNGFHAPEAATTFVSYGRDDDGNDHSVGVSGTTSTSSERRGHASSHESADKRVESFPPQLTYFPSNSPWPYPWNSPMPPPPTFCPPGYPMSIYTTPSYWQWNVPCISPQSPAPGSGPNSPLGKHSRDGNIITPANSQKEKPNTESNNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKANSLNGGGLFKAFPSKGNDKSHVVEASPMLHANPAALTRSLTFHERT 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05156 451 MobiDBLite consensus disorder prediction 1 117 - -
Arst3g05156 451 Pfam Dof domain, zinc finger 113 170 IPR003851 GO:0003677|GO:0006355
Arst3g05156 451 MobiDBLite consensus disorder prediction 55 75 - -
Arst3g05156 451 MobiDBLite consensus disorder prediction 76 103 - -
Arst3g05156 451 MobiDBLite consensus disorder prediction 21 41 - -
Arst3g05156 451 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Arst3g05156 451 SUPERFAMILY Formin homology 2 domain (FH2 domain) 27 399 - -
Arst3g05156 451 MobiDBLite consensus disorder prediction 242 282 - -
Arst3g05156 451 PANTHER CYCLIC DOF FACTOR 2 1 451 IPR045174 GO:0003700|GO:0006355
Arst3g05156 451 MobiDBLite consensus disorder prediction 337 371 - -
Arst3g05156 451 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
Arst3g05156 451 MobiDBLite consensus disorder prediction 356 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05156 Arst-Chr3 126919911 126923412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05156 1 450 C2C2-Dof Transcription Factor Family AT3G47500 43.621 8.59e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Arst3g05156 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05156 - - gmx:100813315 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05156 3 126919911 126923412 Arst3g05156 3 126919911 126923412 ECH
Arst3g05156 3 126919911 126923412 Arst1g04227 1 104621688 104624914 ECH
Arst3g05156 3 126919911 126923412 Arst8g03965 8 49832776 49835067 ECH
Arst3g05156 3 126919911 126923412 Arst1g04227 1 104621688 104624914 PCT