Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04227 ATGGAGGACCAAAGTACTGTTACTATTAGGGACCCTGCAATTAAGCTTTTTGGTCAGAAGATTCCCCTTCCCGGAGATCCTGATGTTCTTCCCGCCGCGCCCATGGACCATGAACAGGACCTGCATGAAGAAGACGAAGAAGAGGAGGAGGAGGAGCTGGATGACGACGAGGAAGACGGAGAAACCCAAGACACTCACGAGGACAAGGATGCAGAAGCTGAAAATCTTACTACCCAAGAGCAAGAAGCTGATCCTCCTCCAAATGTAGAAGAGGACAAGAAATCAGCCACATCACCTGAGGCTATGGTGAATCCGAAAACACCTGCCATAGAAGAAGATTCTGCAAAATCAAAAAGTGACAAGTCAGATAAGGAACAAGGTGACACATCCATTCCACAAGATCAGAAACCCCTGAAGAAGCCTGATAAGTTGCTTCCATGCCCCCGCTGCAATAGCATGGATACTAAATTCTGTTACTACAACAACTACAATGTAAACCAGCCCCGTTATTTCTGCAAAGCCTGTCAACGATACTGGACTGCAGGTGGCACCATGAGGAATGTGCCGGTTGGAGCAGGGCGGCGAAAAAACAAGAACTCTGCCAACCATTATCGCCACATCACAATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTAACGGGACTCATCTCCCTGCTTTGAAAAGCAATGGGAGAGTCCTCAGCTTCGGAATTGATGCCCCAATCTGCGATTCCATGGCATCTGTCCTTAACCTTGGAGAGAAAAAGGTTCTTAATGGCACAAGAAATGGATTCCATCATGGCTTTGATGATCAAAGATTGAAAGTTCCTTCCAAAAGTGGTGAAAACAGCGAAGCTTGCACGAGTTCATCGCCTGTTGCAGTTTCAAATCCAATGGGGGAAAACAGTAAAAGTACTTTCCAAGAACCAATGCTTCCAAGCAACGGTTACCTTCCCCAAGTTCCTTGTATTGCTAGTGTTCCTTGGCCTTATCCGTGGAATGCGGCAATTCCCTCACCAGCTATGTGTCCTCCAGGATTTCCTGCCCTTCCATTCTATCCTGCGGCCTTTTGGAACTGCAGCATGCCAGGGAACTGGAATGTTCCATGGTTTCCTCCACAGTCCTCCCCTTCAAACCCAAAATCTCCAAGTTCCGGACCGAATTCTCCAACTCTGGGGAAGCACTCTAGGGACGGTGACACGGGTAACCAAGATTCTTTGAGCAAAGAAGAGCCACCAAAGCAGAGAAATGGAAGCGTTTTGGTTCCCAAAACGTTGAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGGATCAAGAATGAATCCATTAGTGGGGGAGGCATGTTTAAGGCCTTCCAATCAACAAAAGAAGAAAAGAATCAAGTCGAAGCTTCTCCTGTGTTGCGGGCTAACCCTGCAGCTTTGTCGAGATCCCTTAATTTTCACGAGAGCTCGTGA 1485 0.4734 MEDQSTVTIRDPAIKLFGQKIPLPGDPDVLPAAPMDHEQDLHEEDEEEEEEELDDDEEDGETQDTHEDKDAEAENLTTQEQEADPPPNVEEDKKSATSPEAMVNPKTPAIEEDSAKSKSDKSDKEQGDTSIPQDQKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSANHYRHITISEALQAARIDAPNGTHLPALKSNGRVLSFGIDAPICDSMASVLNLGEKKVLNGTRNGFHHGFDDQRLKVPSKSGENSEACTSSSPVAVSNPMGENSKSTFQEPMLPSNGYLPQVPCIASVPWPYPWNAAIPSPAMCPPGFPALPFYPAAFWNCSMPGNWNVPWFPPQSSPSNPKSPSSGPNSPTLGKHSRDGDTGNQDSLSKEEPPKQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESISGGGMFKAFQSTKEEKNQVEASPVLRANPAALSRSLNFHESS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04227 494 ProSitePatterns Zinc finger Dof-type signature. 147 183 IPR003851 GO:0003677|GO:0006355
Arst1g04227 494 MobiDBLite consensus disorder prediction 111 143 - -
Arst1g04227 494 ProSiteProfiles Zinc finger Dof-type profile. 145 199 IPR003851 GO:0003677|GO:0006355
Arst1g04227 494 MobiDBLite consensus disorder prediction 1 145 - -
Arst1g04227 494 Coils Coil 39 59 - -
Arst1g04227 494 MobiDBLite consensus disorder prediction 281 308 - -
Arst1g04227 494 Pfam Dof domain, zinc finger 143 199 IPR003851 GO:0003677|GO:0006355
Arst1g04227 494 PANTHER CYCLIC DOF FACTOR 2 10 494 IPR045174 GO:0003700|GO:0006355
Arst1g04227 494 MobiDBLite consensus disorder prediction 400 414 - -
Arst1g04227 494 MobiDBLite consensus disorder prediction 40 65 - -
Arst1g04227 494 MobiDBLite consensus disorder prediction 375 430 - -
Arst1g04227 494 MobiDBLite consensus disorder prediction 270 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04227 Arst-Chr1 104621688 104624914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04227 10 492 C2C2-Dof Transcription Factor Family AT3G47500 47.800 1.15e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Arst1g04227 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04227 - - gmx:778113 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04227 1 104621688 104624914 Arst8g03965 8 49832776 49835067 ECH
Arst1g04227 1 104621688 104624914 Arst1g04227 1 104621688 104624914 ECH
Arst3g05156 3 126919911 126923412 Arst1g04227 1 104621688 104624914 ECH
Arst3g05156 3 126919911 126923412 Arst1g04227 1 104621688 104624914 PCT