Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01402 ATGGCCATGTCTAGAAGAGAAATGGATCGGATCAAAGGCCCGTGGAGCCCGGAAGAAGATGAGGCTCTGCAGAGGCTGGTGGAGAGGCACGGGCCCAGGAACTGGACGTTGATAAGCAAGTACATCCCGGGCCGCTCCGGGAAGTCCTGCAGGCTAAGATGGTGTAACCAACTGTCACCTCAGGTTGAGCACCGGGGCTTCACGCCCGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACAATAGCCCGACTCCTGTCTGGTCGAACTGACAACGCGGTAAAGAATCACTGGAACTCAACACTCAAGCGCAAGTGCTCATCCATGATGATCGACGAGCCTGCAACAGGTCCGGCAGACTTTGACGGCGGTTACTACCTACGGCCCGCGAAGAGGTCTGCGAGCGCAGGTGCTACCATGCCGCTATCCACCGGGCTTCACATGAGCCCGACGTCGCCGGGAAGCCCGTCGGGATCCGACGCGAGTGATTGCAGCGTTCGCGCTGTCTCTCCGTCGCACGTTCTGAGGCCCGTGCAGAGGACCGTTGTTCCTCCGATCGAAACTGCGTCCTCTTCAGAGGACCCTCCGACGTCGTTGTCGCTGTCTCTGCCTGGCGTAGACGTTGCTGTGGAAGTCTCCAATCGTGTCACGGAATCTATGTCACGTGCCTTTTCTCCGGCGATGGTGATGGCTTCGGCGGCGCCTTCAACGGCTGTAACGACAGCGGATCCGCTGCCATTGCCATCGCCACAACATCAAGTTGTAGCGCCGTTTAATTTTAGCGCGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAACGCAATGGGATGTGTTTTCAGGCTGCTGGTGGGTTCAGGAACGTTTCGGTAAATCGAGTTGGGATTAGCAAAGTCAACTCGTGA 951 0.5678 MAMSRREMDRIKGPWSPEEDEALQRLVERHGPRNWTLISKYIPGRSGKSCRLRWCNQLSPQVEHRGFTPDEDETIIRAHARFGNKWATIARLLSGRTDNAVKNHWNSTLKRKCSSMMIDEPATGPADFDGGYYLRPAKRSASAGATMPLSTGLHMSPTSPGSPSGSDASDCSVRAVSPSHVLRPVQRTVVPPIETASSSEDPPTSLSLSLPGVDVAVEVSNRVTESMSRAFSPAMVMASAAPSTAVTTADPLPLPSPQHQVVAPFNFSAELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISKVNS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01402 316 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Arst1g01402 316 SMART sant 11 60 IPR001005 -
Arst1g01402 316 SMART sant 63 111 IPR001005 -
Arst1g01402 316 CDD SANT 67 109 IPR001005 -
Arst1g01402 316 FunFam MYB transcription factor 12 63 - -
Arst1g01402 316 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Arst1g01402 316 Gene3D - 65 124 - -
Arst1g01402 316 MobiDBLite consensus disorder prediction 147 172 - -
Arst1g01402 316 CDD SANT 14 56 IPR001005 -
Arst1g01402 316 PANTHER MYB PROTEIN-RELATED 12 193 - -
Arst1g01402 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Arst1g01402 316 FunFam Transcription factor MYB44 66 112 - -
Arst1g01402 316 Gene3D - 11 63 - -
Arst1g01402 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Arst1g01402 316 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Arst1g01402 316 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Arst1g01402 316 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01402 Arst-Chr1 15942005 15943552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g01402 4 314 MYB Transcription Factor Family AT4G37260 51.360 1.58e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst1g01402 Myb_DNA-binding 1.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00813 5 7187651 7188964 Arst1g01402 1 15942005 15943552 ECH
Arst6g04060 6 108766742 108767798 Arst1g01402 1 15942005 15943552 ECH
Arst1g01402 1 15942005 15943552 Arst1g01402 1 15942005 15943552 ECH
Arst1g01402 1 15942005 15943552 Arst5g00813 5 7187651 7188964 PCT