Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3104 ATGGGTTTTTCCTCTCTCCACGTCTGCATGGAACCATCAGACCACTGGCTGCAGGGCACAAGTCACGAGGAGTGTGGGATGGATTCTTCTTCACCATCTGGTGACATGCTTCAGTGTTCAAGGCCAATGACTGAGAGGAGGCTAAGACCCCCGCAAGAGCATGCCCTCAAGTGCCCCAGGTGTGAATCAACCCACACCAAGTTCTGCTACTACAACAACTATAGTCTTTCCCAGCCAAGGTACTTCTGCAAGACTTGTAGGAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTGGGTGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAACCGAATGATCACCAAACAGCTATTAATCAAAATCAAACACAGTATGGAGCCTCTTATCATCATAATCCCAAAGATCTCCAACTTTCCTTCCCAGATGTGCAATTTTCCCACCTCAACAATTTACTTGGGACTAATGCCGGGGCACTAGGAAACCCTAATTTTATGGAAAACAAGTATAACATTGGCATTATCGAGAACCCCAGGCCTATTGATTTCATGGAAAGCAATGGTATGATTAGGAGTTCTACAAGGAATTTTGACTTTCTTGAAAACAGTGATGTGGGTGGGGGTGGTGGTGTTGAGCTTGGTGATATGAGTGGTTACAATGGATTGCCATTAAATTATCAAGGTCTTTGCTCCCCGGCATTTGGGGGCATGTCCCTTGATGGAAGCATTAGCAATGTTGGAAGTTATATAATGGACTACTCCTGCCAGCGACTTATGTTGCCCTATGATGGAGGTGACAACCACGATGGTTCAATTGATGTGAAGCCAAACCCTAAGCTATTGTCTCTTGAATGGCAAGATCAAGGTTGCTCTGACGCTGAAAAAGTGTCACAGCTTGGATATCTTAATTGTTCAGGATCATGGACCGGTTATGGACCTTCCACAACAAACCCTTTGGTCTAG 975 0.4523 MGFSSLHVCMEPSDHWLQGTSHEECGMDSSSPSGDMLQCSRPMTERRLRPPQEHALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKPNDHQTAINQNQTQYGASYHHNPKDLQLSFPDVQFSHLNNLLGTNAGALGNPNFMENKYNIGIIENPRPIDFMESNGMIRSSTRNFDFLENSDVGGGGGVELGDMSGYNGLPLNYQGLCSPAFGGMSLDGSISNVGSYIMDYSCQRLMLPYDGGDNHDGSIDVKPNPKLLSLEWQDQGCSDAEKVSQLGYLNCSGSWTGYGPSTTNPLV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3104 324 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Apr9g3104 324 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Apr9g3104 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 315 IPR045174 GO:0003700|GO:0006355
Apr9g3104 324 PANTHER - 13 315 - -
Apr9g3104 324 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3104 Apr-Chr9 37860220 37861690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3104 1 294 C2C2-Dof Transcription Factor Family AT5G62940 38.304 2.17e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr9g3104 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3104 - - gmx:100815061 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3104 9 37860220 37861690 Apr1g0813 1 10214762 10216583 PCT