Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2996 ATGCACCAAAACGTTGGAGACCCTGCAATTAGGCTCTTCGGCCAGAAGATTCCCCTCTCCGGTGATCTTCACAAAGAACAAGAAGAAGAGGATGAAGATGAACGAGAGATAGAAGAGGAAGGAGACAAGGATCTAGGAGTTGAGAATGTTACTGAGAAAGAGCAAGAAGCTGATCCTCCTCCAGATGAAGAAGAACCTAAGAAGAATTCAGGCACATCACCTGCGGCTATCGTGAACCCTAAGACACCTTCCATAGAAGAAGAAACTGCAAATACAAAGAGTGACAAGTCAGAGAAGGAACAAAGCAATGCAAACAACTCACAAGAGAAGAAGCCAGATAAATTGCTACCATGTCCCCGCTGCAATAGCATGGACACTAAATTCTGTTACTACAACAACTACAACATCAACCAGCCACGATATTTCTGTAAAGCCTGTCAAAGATACTGGACTGCTGGTGGTACCATGAGGAATGTACCGGTGGGAGCCGGACGGCGAAAGACCAAGAATTCTGCTTCGCATTATCGCCACATAATGATCTCTGAGGCTCTTCAAGCAGCAAGAATTGATGCTTCTAATGTAACTCATCTTCCAATTTTGAAAAGCAACGGTAGGGATAGAGTCCTCAGCTTTGGATTAGATGCACCTATCTGCGATTCCATGGCATCTGTCTTGAATCTTGGAGAAAAAAGGGCTCTTAATGACACAAGAAATGACTTTCGTCACCATGGCTTAGAGGATCAAAGACTCTCCATTCCTTGTAAAAGTGGAGAAAATGGTGATGATTGTTCCACTACATCTTCCATTACAGTTTCAGGTTCTGTAGTAGAAAATAGCAAAAGCACTTTACAACAACCAATGCTTCAAAACCATGGTTTCCTTCCTCAACTTCCATGTCTTCCTTGGCCTTATACATGGAATTCTCCAGTTCCCTCGTCTGCTTTGTGTCCTTCAGGATTTCCCATGCCATTCTACCCTGTTCCTTTTTGGAACTGTGGCATGCCAAGGAATTGGAATGTTCCATGGTTTTCCTCTCATTCATCTGCTTCAAGCCCCAACTCTCCAAGCTCAGGTCCAAATTCTCCAACTTTGGGGAAGCACTCAAGGGACGGTGACATGATCAAGCAAGACAATTTGCACAAAGAAGAACCTTCAAAACACAGGAATGGGTGTGTTTTAGTTCCTAAAACGTTAAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACACTAGGAATTAAGAATGAATCAGTGAGTGGGGGAGGTATGTTTAAGGCCTTTCAATCAAGTAAAGACAAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAACTTCCATGAAAACTCTTGA 1395 0.4323 MHQNVGDPAIRLFGQKIPLSGDLHKEQEEEDEDEREIEEEGDKDLGVENVTEKEQEADPPPDEEEPKKNSGTSPAAIVNPKTPSIEEETANTKSDKSEKEQSNANNSQEKKPDKLLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKTKNSASHYRHIMISEALQAARIDASNVTHLPILKSNGRDRVLSFGLDAPICDSMASVLNLGEKRALNDTRNDFRHHGLEDQRLSIPCKSGENGDDCSTTSSITVSGSVVENSKSTLQQPMLQNHGFLPQLPCLPWPYTWNSPVPSSALCPSGFPMPFYPVPFWNCGMPRNWNVPWFSSHSSASSPNSPSSGPNSPTLGKHSRDGDMIKQDNLHKEEPSKHRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGGMFKAFQSSKDKKNHVEASPVLMANPAALSRSLNFHENS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2996 464 MobiDBLite consensus disorder prediction 26 41 - -
Apr9g2996 464 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Apr9g2996 464 MobiDBLite consensus disorder prediction 42 69 - -
Apr9g2996 464 Pfam Dof domain, zinc finger 114 170 IPR003851 GO:0003677|GO:0006355
Apr9g2996 464 PANTHER CYCLIC DOF FACTOR 2 1 463 IPR045174 GO:0003700|GO:0006355
Apr9g2996 464 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
Apr9g2996 464 MobiDBLite consensus disorder prediction 88 107 - -
Apr9g2996 464 PANTHER CYCLIC DOF FACTOR 1 1 463 - -
Apr9g2996 464 Coils Coil 23 43 - -
Apr9g2996 464 MobiDBLite consensus disorder prediction 72 87 - -
Apr9g2996 464 MobiDBLite consensus disorder prediction 345 372 - -
Apr9g2996 464 MobiDBLite consensus disorder prediction 1 117 - -
Apr9g2996 464 MobiDBLite consensus disorder prediction 345 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2996 Apr-Chr9 36823350 36827671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2996 1 462 C2C2-Dof Transcription Factor Family AT3G47500 47.942 1.17e-121 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr9g2996 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2996 - - gmx:778113 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0926 1 13036060 13039435 Apr9g2996 9 36823350 36827671 ECH
Apr6g0205 6 2161650 2165125 Apr9g2996 9 36823350 36827671 ECH
Apr7g1501 7 22195186 22199330 Apr9g2996 9 36823350 36827671 ECH
Apr3g0924 3 24073471 24077137 Apr9g2996 9 36823350 36827671 ECH
Apr9g2996 9 36823350 36827671 Apr9g2996 9 36823350 36827671 ECH
Apr7g1501 7 22195186 22199330 Apr9g2996 9 36823350 36827671 PCT