Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2929 ATGCAGGAAATACATTCCATCGGAGGACCCACCTTTTTCGCCGCACCCGGAGACAGAAGGCTAAGACCCCACCACCACAACCACAACCACAACCACAACCACCAAGCCTTGAAGTGTCCACGCTGCGACTCTCTCAACACTAAGTTCTGTTACTACAACAACTACAACCTCTCCCAACCCCGCCACTTCTGCAAAAACTGCCGCCGCTATTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGAGGTTGCCGTAAATCCAAACGGGCAAACAAGATCTCCAAAAATTTAACCTCCTCCGATACCCCCGCCGCGACGACCACCGCGCCGCCGGCCGAGCCGGAGCTCAAGTCCAACTCTCATTCAAGCAGCGAGAGTTCAAGCCTCACCGCCGCGCCCACCGCGACGGAGGCGGTGTCGGCGCCGTCAACGTTGAAGACTGATTCCAACAATAGCATTCAAGAGTCGAAGTTGTTGATCCCTGTGGAGCCTGTTTTGGAACAGGGTTCTCTGGAACAAGGAACAGGGGACTGTGGTGGGATTTTCTCCGAGATTGGAACCTTTACGAGCTTGATCACTTCTGCTAACGAGGCATTGGCGTTTGGGTTCGGTAACGGTGTTCCTGATGCGTCATCGTTTCAGTGGCAGCAGCAGAAGGTGATGAGCATCAGTGGGGAGCCTCATCCACATGAAGAGGATTTGAAGTTGCCGGAGAGTCTCGCTGGTGGCTCTTTGCTTGATCATAGCGTTGATTTGTCGGGGTTGCACGGTAAGAGCGCTCACGGAGGATTTGGATCGCTGGATTGGAACGGCGGTGCAGATCAAGGGGAACTGAGTCGGAGTGAGTATATTACAAGACTCTATGTGTACAACTCTGGCGATGATGTTAATGTTCATTCTTTGATATTCTGCCAACATATTTGCCACGATCTTTGCCCTTTATATTAG 954 0.5314 MQEIHSIGGPTFFAAPGDRRLRPHHHNHNHNHNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRANKISKNLTSSDTPAATTTAPPAEPELKSNSHSSSESSSLTAAPTATEAVSAPSTLKTDSNNSIQESKLLIPVEPVLEQGSLEQGTGDCGGIFSEIGTFTSLITSANEALAFGFGNGVPDASSFQWQQQKVMSISGEPHPHEEDLKLPESLAGGSLLDHSVDLSGLHGKSAHGGFGSLDWNGGADQGELSRSEYITRLYVYNSGDDVNVHSLIFCQHICHDLCPLY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2929 317 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Apr9g2929 317 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Apr9g2929 317 MobiDBLite consensus disorder prediction 21 35 - -
Apr9g2929 317 MobiDBLite consensus disorder prediction 1 36 - -
Apr9g2929 317 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Apr9g2929 317 MobiDBLite consensus disorder prediction 82 154 - -
Apr9g2929 317 MobiDBLite consensus disorder prediction 95 154 - -
Apr9g2929 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 208 IPR045174 GO:0003700|GO:0006355
Apr9g2929 317 PANTHER DOF ZINC FINGER PROTEIN 4 25 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2929 Apr-Chr9 36163822 36167407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2929 18 290 C2C2-Dof Transcription Factor Family AT5G60850 41.135 1.65e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr9g2929 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2929 - - pvu:PHAVU_003G182100g 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2929 9 36163822 36167407 Apr9g2929 9 36163822 36167407 ECH