Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2384 ATGTTGAATGTTTTTGAAAGGAAGAAGAGAAGCATGGAAGTAGAAGACTGGGATTTGAGCGCAGAGGATCTCGATTCTCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCCACCCTTCTTCTCCGCATCAACACCATTCTGCAACCAACCAGTTCCCACCAAAACCCCTTTCCGGTTCACGTCCTCAAACTGTTGGTGCTGTGTCGCAAGGAGCAAGAGTATTGCCCACGTCATTGAAGTCAGGGACAAACAACGATGAACATTCAAAAGACCTCCCAAAGATTTCGGTCAAATTTTTTCTTCATTCCACTGGAAATGTTGCAGCAAAGTTTCCATATGACCAGGGAGTAGTTGCTGCTTTTCGAAAAATCCCTAAATCTTCTTGGAATGCAAAAGAACGGTTATGGATGTTCCCGCTATCTTCCTTGTCAGAAGCAGAAAAAGTTCTTGGAGAAATATCTGGTTATAATGTTCAGGTGGAAAGATTTGATCCCTTAGTGCAACGTGCCATTACTGCTGCATCTGCAGTTCCCGATCTTCGAGATCGGTATGACAAGATCCCTAGCTATGTTGAATCAAAGCTTATGCCATTTCAGCGAGAGGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGCTCTTTTAGCAGATGAGATGGGACTTGGGAAAACCTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGACTCGTGGCCTGTTCTCATACTTGCACCATCTTCATTACGCTTACAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCTTCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTTAATATAGTATCTTCAAGTGCCAAAAGAAGCATTCATCTGGATGGACTATTCAACATTATTTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTTTGGCATCTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTTATTAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAATATGGCAACCGATATTGCAAGGGTGGGATTTTTGGAATTTATCAAGGTGCTAGTAACCATGAAGAATTGCACAACTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGTCTGACAAGGACTTGAAGCAAATTAATGCTTTATTCCGTGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCATCTAAATCAAAGGAGGAAGCTGAATCACTCAAGTTTACTCAAAAGAATTTGATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGACTATGTTGGAACTGTAATTGAGGCAGGTTGTAAATTTCTTATATTTGCACACCATCAGCCAATGATAGATTCAATACACGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAAGTACACCTGCTACATCAAGGCAACAATTGGTTACTGAGTTTCAGGAAAAGGATGCTATCAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGACTTAATTCAGGCTGAAGATCGTGTTCATAGAATTGGCCAGGTGTCTTCGGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGAGGTCTCAGCTAATTTGCCGGGGAATAGCCCTGCAAAGCAGAAAACTCTTGACCAGTTTGTTAGAAGATGTAATAACATGGATGGGTTGGAACATCAGTCCAACCCCAAACGACCGCGACACTGA 2070 0.4155 MLNVFERKKRSMEVEDWDLSAEDLDSLERDAFQKIAQLRHPSSPHQHHSATNQFPPKPLSGSRPQTVGAVSQGARVLPTSLKSGTNNDEHSKDLPKISVKFFLHSTGNVAAKFPYDQGVVAAFRKIPKSSWNAKERLWMFPLSSLSEAEKVLGEISGYNVQVERFDPLVQRAITAASAVPDLRDRYDKIPSYVESKLMPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVAACVQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSAKRSIHLDGLFNIISYDLVPKLQNMLLASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGIFGIYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLSDKDLKQINALFRELEMVKAKIKASKSKEEAESLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPATSRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSANLPGNSPAKQKTLDQFVRRCNNMDGLEHQSNPKRPRH* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2384 689 MobiDBLite consensus disorder prediction 37 71 - -
Apr9g2384 689 SMART ultradead3 193 386 IPR014001 -
Apr9g2384 689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 378 IPR014001 -
Apr9g2384 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 649 IPR027417 -
Apr9g2384 689 CDD SF2_C_SNF 493 617 - -
Apr9g2384 689 Gene3D - 458 681 IPR027417 -
Apr9g2384 689 SMART helicmild6 523 606 IPR001650 -
Apr9g2384 689 ProSiteProfiles HARP domain profile. 93 167 IPR010003 -
Apr9g2384 689 Coils Coil 449 469 - -
Apr9g2384 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 420 IPR027417 -
Apr9g2384 689 CDD DEXHc_HARP_SMARCAL1 197 420 - -
Apr9g2384 689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 649 IPR001650 -
Apr9g2384 689 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 15 674 - -
Apr9g2384 689 Pfam Helicase conserved C-terminal domain 507 606 IPR001650 -
Apr9g2384 689 Pfam SNF2-related domain 215 476 IPR000330 GO:0005524|GO:0140658
Apr9g2384 689 MobiDBLite consensus disorder prediction 39 71 - -
Apr9g2384 689 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 15 674 IPR030101 GO:0006281|GO:0031297|GO:0036310
Apr9g2384 689 Gene3D - 169 444 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2384 Apr-Chr9 31395837 31406831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2384 464 626 RAD5 or RAD16-like Gene Family AT1G05120 30.952 7.83e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr9g2384 SNF2_N 1.3e-27 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2384 9 31395837 31406831 Apr9g2384 9 31395837 31406831 ECH
Apr9g2384 9 31395837 31406831 Apr3g1628 3 31749056 31750139 PCT