Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1910 ATGAAGTCGAACACTGCAACAATTACATTGTTCCTGTTGTTGGCTATTTTTGGTATAGGCCAATCAACTGTCATTAATATAAATAAATTTGGTGGAAATCCAAACGCAGATATAACACGGGCTTTCACGAGTGCCTGGAAAGAAGCATGTGTATCAACAACTCCAAGCAAAATTCTGATTCCAAGGGGAACATACAAGATGAATGAAATAGACGTAAAAGGTCCTTGTAAGGCTCCCATTGAAGTTCAAGTTGATGGAACCATTCAAGCACCAGCTGACCCAAATGCACTCCACGATGCTTATCAATGGGTCAAATTTGGATATGTTGACTTTTTAACCATATCAGGTAAAGGCACTTTTGATGGTCAAGGGTCAAGATCTTGGAAAGAAAATGACTGTGGAACAAACAAGAATTGCAAGAGGCGTTCCATGAATTTTGGTTTCAACTTCATAAAGCATTCAATTATTCGCGACATTACTTCTAAGGACAGCAAAAATTTCCATGTCAATGTTTTGGGGTGCACCAATGTCACATTTGATGGCTTCATCGTCAGTGCTCCTGGTAACAGCATCAACACCGATGGGATCCACTTGGGAAGATCAACTAATGTGAAAATTCTTAACACTAATATTGCAACGGGTGATGATTGTATCTCAATCGGAGATGGCAGCAGACAAATAACTATTCAAAACGTGAATTGTGGACCTGGCCATGGCATTAGTGTTGGAAGCCTTGGAAAGTATGTAAATGAAGAGTCTGTGGAACATCTTTTAGTCAAGAATTGCACCTTGACAAATACTGACAATGGTATAAGGATCAAGACATGGCCTAGTGCCCCAGGAACTTCTCCCATTACTGATATGCATGTTGAAGATATTACAATGGTTAATGTCTTGAACCCAATTATCATTGACCAAGAGTACTGTCCTTGGAATCAATGTTCAAAGCAGGTTCCATCAAAAATAAAGATAAGTAAGATTGTGTTCAAGAATATTAAGGGCACATCAAAGAGCAAAGAGGGAGTGACTCTTGTATGCAGCAGGGGTGTACCATGTGAGGGTGTGCAACTGATTGATGTTGCTCTTACATTCAATGGAGCTCCAACAGTTGCTAAATGTTCTAATGTCAAGCCCATAGTTACTGGAAAGGCTCCCGTTTGTGCAGCTTAA 1170 0.3991 MKSNTATITLFLLLAIFGIGQSTVININKFGGNPNADITRAFTSAWKEACVSTTPSKILIPRGTYKMNEIDVKGPCKAPIEVQVDGTIQAPADPNALHDAYQWVKFGYVDFLTISGKGTFDGQGSRSWKENDCGTNKNCKRRSMNFGFNFIKHSIIRDITSKDSKNFHVNVLGCTNVTFDGFIVSAPGNSINTDGIHLGRSTNVKILNTNIATGDDCISIGDGSRQITIQNVNCGPGHGISVGSLGKYVNEESVEHLLVKNCTLTNTDNGIRIKTWPSAPGTSPITDMHVEDITMVNVLNPIIIDQEYCPWNQCSKQVPSKIKISKIVFKNIKGTSKSKEGVTLVCSRGVPCEGVQLIDVALTFNGAPTVAKCSNVKPIVTGKAPVCAA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1910 389 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
Apr9g1910 389 SUPERFAMILY Pectin lyase-like 8 385 IPR011050 -
Apr9g1910 389 SMART pbh1 254 275 IPR006626 -
Apr9g1910 389 SMART pbh1 201 222 IPR006626 -
Apr9g1910 389 SMART pbh1 224 244 IPR006626 -
Apr9g1910 389 SMART pbh1 174 200 IPR006626 -
Apr9g1910 389 PANTHER POLYGALACTURONASE 7 387 - -
Apr9g1910 389 PANTHER - 7 387 - -
Apr9g1910 389 Pfam Glycosyl hydrolases family 28 50 377 IPR000743 GO:0004650|GO:0005975
Apr9g1910 389 Gene3D - 19 385 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1910 Apr-Chr9 27674765 27676272 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1910 9 27674765 27676272 Apr9g1910 9 27674765 27676272 ECH