Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1909 ATGACCATGAAGTTGAACATTGCGACGATTACATTGTTCTTGTTGCTGGCTATCTTTGGTATAGCCCAGTCAACTATCATTAATATAAACAAATTTGGTGGAAAACCAAACACAGATATAACACAGGCTTTCACGAGTGCCTGGAAAGAAGCATGTGTATCAACAACTCCAAGCAAAATTCTGATTCCACGTGGGACATACAGGATGAATGAAATAGATGTAAAAGGTCCTTGTAAGGCTCCCATTGAAGTTCAAGTTGATGGAACCATTCAAGCACCAGCTGACCCAAATGCACTCCACGATGCTTATCAATGGGTCAAATTTGGATATGTTGACTTTTTAACCATATCAGGTAAAGGCACTTTTGATGGTCAAGGGTCAAGATCTTGGAAAGAAAATGACTGTGGAACAAACAAGAATTGCAAGAGGCGTTCCATGAATTTTGGTTTCAACTTCATAAAGCATTCAATTATTCGCGACATAACTTCTAAGGACAGCAAAAATTTTCATGTCAATGTTTTGGGGTGCACCAATGTCACATTTGATGGCTTCATCGTCAGTGCTCCTGGTAACAGCATCAACACCGATGGGATCCACTTGGGAAGATCAACTGATGTGAAAATTCTTAACACCAACATTGCAACGGGTGATGATTGTATCTCAATCGGAGATGGCAGCAGACAAATAACTATTCAAAACGTGAATTGTGGACCTGGCCATGGCATTAGTGTTGGAAGCCTTGGAAAGTATGTAAATGAAGAGTCTGTGGAACATCTTTTAGTCAAGAATTGCACCTTGACAAATACTGACAATGGTATAAGGATCAAGACATGGCCTAGCGCCCCAGGAACTTCTCCCATTACTGATATGCATGTTGAAGATATTACAATGGTTAATGTTTTGAACCCAATTATTATTGACCAAGAATACTGTCCATGGAATCAATGCTCAAAGCAGGTTCCATCAAAAATAAAGATAAGTAAGATTGTGTTCAAGAATATTAAGGGCACATCAAAGAGCAAGGAAGGAGTGACTCTTGTATGCAGCAGGGGTGTACCATGTGAGGGTGTGCAACTGATTGATGTTGCTCTTACATTCAATGGAGCTCCAACAGTTGCTAAATGTTCTAATGTCAAGCCCATAGTTACTGGAAAGGCTCCCGTTTGTTCAGCTTAA 1176 0.4005 MTMKLNIATITLFLLLAIFGIAQSTIININKFGGKPNTDITQAFTSAWKEACVSTTPSKILIPRGTYRMNEIDVKGPCKAPIEVQVDGTIQAPADPNALHDAYQWVKFGYVDFLTISGKGTFDGQGSRSWKENDCGTNKNCKRRSMNFGFNFIKHSIIRDITSKDSKNFHVNVLGCTNVTFDGFIVSAPGNSINTDGIHLGRSTDVKILNTNIATGDDCISIGDGSRQITIQNVNCGPGHGISVGSLGKYVNEESVEHLLVKNCTLTNTDNGIRIKTWPSAPGTSPITDMHVEDITMVNVLNPIIIDQEYCPWNQCSKQVPSKIKISKIVFKNIKGTSKSKEGVTLVCSRGVPCEGVQLIDVALTFNGAPTVAKCSNVKPIVTGKAPVCSA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1909 391 SMART pbh1 256 277 IPR006626 -
Apr9g1909 391 SMART pbh1 176 202 IPR006626 -
Apr9g1909 391 SMART pbh1 226 246 IPR006626 -
Apr9g1909 391 SMART pbh1 203 224 IPR006626 -
Apr9g1909 391 PANTHER - 6 389 - -
Apr9g1909 391 SUPERFAMILY Pectin lyase-like 10 387 IPR011050 -
Apr9g1909 391 Pfam Glycosyl hydrolases family 28 52 379 IPR000743 GO:0004650|GO:0005975
Apr9g1909 391 Gene3D - 20 387 IPR012334 -
Apr9g1909 391 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Apr9g1909 391 PANTHER POLYGALACTURONASE 6 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1909 Apr-Chr9 27670117 27671642 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1909 9 27670117 27671642 Apr9g1909 9 27670117 27671642 ECH