Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1907 ATGAAGTCGAACACTGCAACAATTACATTGTTCTTCTTGTTGGCTATTTTTGGTATAGGTCAATCAACTGTCATTAATATAAATAAATTTGGTGGAAATCCAAACGCAGATATAACAACGGCTTTCACGAGTGCCTGGAAAGAAGCATGTGTATCAACAACTCCAACCAAAATTCTGATTCCAAGGGGAACATACAAGATGAATGAAATAGACGTAAAAGGTCCTTGTAAGGCTCCCATTGAAGTTCAAGTTGATGGAACCATTCAAGCACCAGCTGACCCAAATGCACTCCACGATGCTTATCAATGGGTCAAATTTGGATACGTTGACTTTTTAACCATATCAGGTAAAGGCACTTTTGATGGTCAAGGGGCAAGATCTTGGAAAGAAAATGACTGTGGAACAAACAAGAATTGCAAGAGGCGTTCCATGAATTTTGGTTTCAACTTCATAAAGCATTCAATTATTCGCGACATAACTTCTAAGGACAGCAAAAATTTTCATGTCAATGTTTTGGGGTGCACCAATGTCACATTTGATGGCTTCATCGTCAGTGCTCCTGGTAACAGCATCAACACCGATGGGATCCACTTGGGAAGATCAACTGATGTGAAAATTCTTAACACCAACATTGCAACGGGTGATGATTGTATCTCAATCGGAGATGGCAGCAGACAAATAACTATTCAAAACGTGAATTGTGGACCTGGCCATGGCATTAGTGTTGGAAGCCTTGGAAAGTATGTAAATGAAGAGTCTGTGGAACATCTTTTAGTCAAGAATTGCACCTTGACAAATACTGACAATGGTATAAGGATCAAGACATGGCCTAGTGCCCCAGGAACTTCTCCCATTACTGATATGCATGTTGAAGATATTACAATGGTTAATGTCTTGAACCCAATTATCATTGACCAAGAGTACTGTCCTTGGAATCAATGTTCAAAGCAGGTTCCCTCAAAAATAAAGATAAGTAAGATTGTGTTCAAGAATATTAAGGGCACATCAAAGAGCAAGGAAGGAGTGACGCTTGTATGCAGCAGGGGTGTACCATGTGAGGGTGTGCAACTGATTGATGTTGCTCTTACATTCAATGGAGCTCCAACAGTTGCTAAATGTTCTAATGTCAGGCCCATAGTTAGCGGAAAGGCTCCCGTTTGTGCAGCTTAA 1170 0.4034 MKSNTATITLFFLLAIFGIGQSTVININKFGGNPNADITTAFTSAWKEACVSTTPTKILIPRGTYKMNEIDVKGPCKAPIEVQVDGTIQAPADPNALHDAYQWVKFGYVDFLTISGKGTFDGQGARSWKENDCGTNKNCKRRSMNFGFNFIKHSIIRDITSKDSKNFHVNVLGCTNVTFDGFIVSAPGNSINTDGIHLGRSTDVKILNTNIATGDDCISIGDGSRQITIQNVNCGPGHGISVGSLGKYVNEESVEHLLVKNCTLTNTDNGIRIKTWPSAPGTSPITDMHVEDITMVNVLNPIIIDQEYCPWNQCSKQVPSKIKISKIVFKNIKGTSKSKEGVTLVCSRGVPCEGVQLIDVALTFNGAPTVAKCSNVRPIVSGKAPVCAA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1907 389 Pfam Glycosyl hydrolases family 28 50 377 IPR000743 GO:0004650|GO:0005975
Apr9g1907 389 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
Apr9g1907 389 Gene3D - 19 385 IPR012334 -
Apr9g1907 389 SUPERFAMILY Pectin lyase-like 8 385 IPR011050 -
Apr9g1907 389 SMART pbh1 254 275 IPR006626 -
Apr9g1907 389 SMART pbh1 201 222 IPR006626 -
Apr9g1907 389 SMART pbh1 224 244 IPR006626 -
Apr9g1907 389 SMART pbh1 174 200 IPR006626 -
Apr9g1907 389 PANTHER - 12 387 - -
Apr9g1907 389 PANTHER POLYGALACTURONASE 12 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1907 Apr-Chr9 27659180 27660695 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1907 9 27659180 27660695 Apr9g1907 9 27659180 27660695 ECH