Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1841 ATGGCGGACTCGGACAACGACTCAGGAGGAGCGCACAACGCGGGAAACAATGCCAACAGCAGCGAGTTATCGCCCCGGGAGCAAGACCGGTTCTTGCCGATAGCGAACGTTAGCAGAATCATGAAGAAGGCGCTTCCGGCGAACGCCAAGATCTCAAAGGACGCGAAAGAGACGGTGCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGACAAGTGCCAGAGAGAGAAGCGCAAAACTATAAACGGCGACGACCTACTTTGGGCCATGACGACCTTGGGCTTCGAGGACTACGTTGAGCCTCTAAAGATTTACCTTCAACGCTTTAGGGAGATGGAGGGAGAGAAGACCGTTGCCGCACGTGACAAGGACGCCGCCGTCGCGAACGTGTACGAGTACTCGGCCGCTGCGGGCGGAGGAGGGGGAGGGATGATGATGCACCAAGGACACGTGTACGGTTCTCATGCGTTTCATCAAGTGGGTGTCACTGGTGGTAGTGGTTCTCCTGTTTTGGGTAAGCCCGGGCCCACTTATCCTTCCGCTGGATCCAATGCGGGTAGACCCAGGTAG 585 0.5692 MADSDNDSGGAHNAGNNANSSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKTVAARDKDAAVANVYEYSAAAGGGGGGMMMHQGHVYGSHAFHQVGVTGGSGSPVLGKPGPTYPSAGSNAGRPR* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1841 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr9g1841 194 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Apr9g1841 194 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 157 - -
Apr9g1841 194 MobiDBLite consensus disorder prediction 168 194 - -
Apr9g1841 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Apr9g1841 194 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Apr9g1841 194 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Apr9g1841 194 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Apr9g1841 194 MobiDBLite consensus disorder prediction 1 28 - -
Apr9g1841 194 MobiDBLite consensus disorder prediction 9 26 - -
Apr9g1841 194 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr9g1841 194 Gene3D Histone, subunit A 19 141 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1841 Apr-Chr9 27185842 27187050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1841 1 160 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.727 2.47e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr9g1841 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1841 K08065 - gmx:100813580 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1841 9 27185842 27187050 Apr9g1841 9 27185842 27187050 ECH
Apr2g0308 2 3692974 3693666 Apr9g1841 9 27185842 27187050 PCT