Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0849 ATGCCATATCAAAACCCCATTTTACATATCACTCTCCTCTTGTTGTTACTCTTTCATGTTCTACTCAATGCAGCTCCCATGAGTTGCAAATCCACCATTGAGCCATGCTCCAACATTGACTCGTGCAATGCTCTTCTTGGCTACACCCTTTACACTGACCTCAAAGTCTCTGAAGTTGCATCACTCTTCCAAATAGATTCCACTGCTCTTCTAACTGCCAATGCCATTGACATCTCTTACCCTGATGTAGAGCAACACATTCTCCCTTCACAGCTATTCCTTAAGGTCCCCATCACATGTTCCTGTGTTGATGGGATCAGAAAATCAGTGTCCACCCATTATAGGATTCACCCTTCTGATACTGTCTCTTCCATTGCAGATTCAATATATGGGGGTCTAGTTTCTCCTGATCAGCTTATGGAAGCTAATTCCATAGCTGATCCTTCAGTTCTTGATGTCGGTCAGAGCCTTTTGGTGCCTCTTCCTTGCACTTGCTTCAATGGGACTGATAACTCTTTGCCTGCAATTTATCTCTCCTATGTGGTTCAGTCAATTGATACTTTGGCTGCAATTGCAGATAGATATTCCACCACTCTTACTGATTTGATGAATGTTAATGCCATGTGGACTACAGCTATCTCTGATGGTGATATTCTCGCTGTTCCAATACCTGCTTGTGCATCAAATTTTCCAAAATATGTCTCTGATTTTGGTTTGCTTGTCCCTAATGGAAGCTATGCAATTACAGCAAGTCACTGTGTGCAGTGTAGTTGTGGACCACGAAATTTAAATTTATACTGCATGCCAGCTTCTCTAGCTGTCTCTTGCTCAAGCATGCAATGTAAAAGCAGCAATCTTATGCTTGGGAATGTTACTATACAACCGAGTAGTTCTGGTTGCAGTGTTACCGCTTGCAATTATGATGGTTTCGTTAATGGCACCATAATAACTACTTTGTCACCATCTCTTCAGCCTCGATGTCCAGGACCACAGCAATTCCCTCTACTTATAGACCCACCTACATCTGTTGCAAGGAAATCGGTATATGCCTTAGCCCCATCACCATCCCCATCATCCCAATCAGATCTAACAGCATCCAAATCTTCGGTTGTGCCTGCAACAGGGTCATTTCCTGGATTCTCACCTGCAAATGGCCCTGTTAGTGGCATTGCTTCTGCTACTTCTGCCACTTCTGCTGCTTGCTCCTTGATGAATCTGTTGCCCATTTTGATGTCTGCATTTATGTTATTGCTTGTAAAGTTGATGATCCCTTTGGCCTTGTAA 1284 0.4307 MPYQNPILHITLLLLLLFHVLLNAAPMSCKSTIEPCSNIDSCNALLGYTLYTDLKVSEVASLFQIDSTALLTANAIDISYPDVEQHILPSQLFLKVPITCSCVDGIRKSVSTHYRIHPSDTVSSIADSIYGGLVSPDQLMEANSIADPSVLDVGQSLLVPLPCTCFNGTDNSLPAIYLSYVVQSIDTLAAIADRYSTTLTDLMNVNAMWTTAISDGDILAVPIPACASNFPKYVSDFGLLVPNGSYAITASHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKSSNLMLGNVTIQPSSSGCSVTACNYDGFVNGTIITTLSPSLQPRCPGPQQFPLLIDPPTSVARKSVYALAPSPSPSSQSDLTASKSSVVPATGSFPGFSPANGPVSGIASATSATSAACSLMNLLPILMSAFMLLLVKLMIPLAL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0849 427 SUPERFAMILY LysM domain 178 223 IPR036779 -
Apr9g0849 427 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 401 - -
Apr9g0849 427 CDD LysM 179 206 IPR018392 -
Apr9g0849 427 CDD LysM 112 159 IPR018392 -
Apr9g0849 427 Gene3D LysM domain 169 229 IPR036779 -
Apr9g0849 427 ProSiteProfiles LysM domain profile. 112 159 IPR018392 -
Apr9g0849 427 SUPERFAMILY LysM domain 112 161 IPR036779 -
Apr9g0849 427 Gene3D LysM domain 108 168 IPR036779 -
Apr9g0849 427 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 14 401 - -
Apr9g0849 427 SMART LysM_2 179 222 IPR018392 -
Apr9g0849 427 SMART LysM_2 113 160 IPR018392 -
Apr9g0849 427 Pfam LysM domain 114 160 IPR018392 -
Apr9g0849 427 Pfam LysM domain 180 222 IPR018392 -
Apr9g0849 427 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0849 Apr-Chr9 16244454 16247221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0849 4 418 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 64.423 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0849 - - pvu:PHAVU_008G163700g 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0849 9 16244454 16247221 Apr9g0849 9 16244454 16247221 ECH